JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
STRIP2_chr7_129429432_129493399	0/0	c0013	2505	1	0	0	0	1	0	copy fasta	STRIP2	chr7	129429432	129493399
STRIT1_chr3_155285227_155298683	1/1	c0001	108	444	92	78	222	14	36	copy fasta	STRIT1	chr3	155285227	155298683
STRN3_chr14_30888804_31031379	1/0	c0001	2394	139	36	19	67	3	13	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/1	c0002	2394	116	20	21	58	3	13	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	c0003	2394	52	3	5	37	0	7	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	c0004	2394	27	5	13	1	1	7	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	c0005	2394	10	10	0	0	0	0	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	c0006	2394	3	2	1	0	0	0	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	c0007	2394	2	0	0	2	0	0	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	c0008	2394	2	0	0	2	0	0	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	c0009	2394	2	2	0	0	0	0	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	c0010	2394	2	2	0	0	0	0	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	c0011	2394	1	0	0	1	0	0	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	c0012	2394	1	0	0	1	0	0	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	c0013	2394	1	0	0	1	0	0	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	c0014	2394	1	0	0	1	0	0	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	c0015	2394	1	1	0	0	0	0	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	c0016	2394	1	0	0	0	1	0	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	c0017	2394	1	0	1	0	0	0	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	c0018	2394	1	0	0	1	0	0	copy fasta	STRN3	chr14	30888804	31031379
STRN3_chr14_30888804_31031379	0/0	c0019	2394	1	1	0	0	0	0	copy fasta	STRN3	chr14	30888804	31031379
STRN4_chr19_46714511_46751450	1/1	c0001	2262	295	51	61	134	12	35	copy fasta	STRN4	chr19	46714511	46751450
STRN4_chr19_46714511_46751450	0/0	c0002	2262	37	11	7	11	2	6	copy fasta	STRN4	chr19	46714511	46751450
STRN4_chr19_46714511_46751450	0/0	c0003	2262	31	20	5	5	0	1	copy fasta	STRN4	chr19	46714511	46751450
STRN4_chr19_46714511_46751450	0/0	c0004	2262	19	0	3	14	0	2	copy fasta	STRN4	chr19	46714511	46751450
STRN4_chr19_46714511_46751450	0/0	c0005	2262	7	7	0	0	0	0	copy fasta	STRN4	chr19	46714511	46751450
STRN4_chr19_46714511_46751450	0/0	c0006	2262	5	4	1	0	0	0	copy fasta	STRN4	chr19	46714511	46751450
STRN4_chr19_46714511_46751450	0/0	c0007	2262	1	0	1	0	0	0	copy fasta	STRN4	chr19	46714511	46751450
STRN4_chr19_46714511_46751450	0/0	c0008	2262	1	0	0	1	0	0	copy fasta	STRN4	chr19	46714511	46751450
STRN4_chr19_46714511_46751450	0/0	c0009	2262	1	0	0	1	0	0	copy fasta	STRN4	chr19	46714511	46751450
STRN4_chr19_46714511_46751450	0/0	c0010	2262	1	1	0	0	0	0	copy fasta	STRN4	chr19	46714511	46751450
STRN4_chr19_46714511_46751450	0/0	c0011	2262	1	0	0	1	0	0	copy fasta	STRN4	chr19	46714511	46751450
STRN4_chr19_46714511_46751450	0/0	c0012	2262	1	0	0	1	0	0	copy fasta	STRN4	chr19	46714511	46751450
STRN4_chr19_46714511_46751450	0/0	c0013	2262	1	0	1	0	0	0	copy fasta	STRN4	chr19	46714511	46751450
STRN4_chr19_46714511_46751450	0/0	c0014	2262	1	0	1	0	0	0	copy fasta	STRN4	chr19	46714511	46751450
STRN_chr2_36832698_36971536	1/1	c0001	2343	293	74	49	121	13	34	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	c0002	2343	3	0	0	1	0	2	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	c0003	2343	1	0	0	1	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	c0004	2343	1	0	0	1	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	c0005	2343	1	1	0	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	c0006	2343	1	0	0	0	1	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	c0007	2343	1	0	1	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STRN_chr2_36832698_36971536	0/0	c0008	2343	1	1	0	0	0	0	copy fasta	STRN	chr2	36832698	36971536
STS_chrX_7142712_7359641	1/1	c0001	1737	221	49	44	94	11	21	copy fasta	STS	chrX	7142712	7359641
STS_chrX_7142712_7359641	0/0	c0002	1737	2	2	0	0	0	0	copy fasta	STS	chrX	7142712	7359641
STS_chrX_7142712_7359641	0/0	c0003	1737	2	0	0	2	0	0	copy fasta	STS	chrX	7142712	7359641
STS_chrX_7142712_7359641	0/0	c0004	1737	1	0	0	1	0	0	copy fasta	STS	chrX	7142712	7359641
STS_chrX_7142712_7359641	0/0	c0005	1737	1	0	1	0	0	0	copy fasta	STS	chrX	7142712	7359641
STS_chrX_7142712_7359641	0/0	c0006	1737	1	0	0	1	0	0	copy fasta	STS	chrX	7142712	7359641
STS_chrX_7142712_7359641	0/0	c0007	1737	1	0	0	0	0	1	copy fasta	STS	chrX	7142712	7359641