JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
STS_chrX_7142712_7359641	0/0	c0008	1737	1	1	0	0	0	0	copy fasta	STS	chrX	7142712	7359641
STS_chrX_7142712_7359641	0/0	c0009	1737	1	0	1	0	0	0	copy fasta	STS	chrX	7142712	7359641
STT3A_chr11_125587852_125628091	1/0	c0001	2118	207	45	44	94	7	16	copy fasta	STT3A	chr11	125587852	125628091
STT3A_chr11_125587852_125628091	0/1	c0002	2118	111	18	15	62	5	10	copy fasta	STT3A	chr11	125587852	125628091
STT3A_chr11_125587852_125628091	0/0	c0003	2118	19	13	2	0	1	3	copy fasta	STT3A	chr11	125587852	125628091
STT3A_chr11_125587852_125628091	0/0	c0004	2118	14	9	1	4	0	0	copy fasta	STT3A	chr11	125587852	125628091
STT3A_chr11_125587852_125628091	0/0	c0005	2118	3	2	1	0	0	0	copy fasta	STT3A	chr11	125587852	125628091
STT3A_chr11_125587852_125628091	0/0	c0006	2118	1	0	0	0	0	1	copy fasta	STT3A	chr11	125587852	125628091
STT3A_chr11_125587852_125628091	0/0	c0007	2118	1	1	0	0	0	0	copy fasta	STT3A	chr11	125587852	125628091
STT3A_chr11_125587852_125628091	0/0	c0008	2118	1	0	1	0	0	0	copy fasta	STT3A	chr11	125587852	125628091
STT3A_chr11_125587852_125628091	0/0	c0009	2118	1	0	0	0	1	0	copy fasta	STT3A	chr11	125587852	125628091
STT3A_chr11_125587852_125628091	0/0	c0010	2118	1	1	0	0	0	0	copy fasta	STT3A	chr11	125587852	125628091
STT3A_chr11_125587852_125628091	0/0	c0011	2118	1	1	0	0	0	0	copy fasta	STT3A	chr11	125587852	125628091
STT3B_chr3_31527925_31642616	1/1	c0001	2481	321	76	51	160	12	20	copy fasta	STT3B	chr3	31527925	31642616
STT3B_chr3_31527925_31642616	0/0	c0002	2481	6	6	0	0	0	0	copy fasta	STT3B	chr3	31527925	31642616
STT3B_chr3_31527925_31642616	0/0	c0003	2481	4	4	0	0	0	0	copy fasta	STT3B	chr3	31527925	31642616
STT3B_chr3_31527925_31642616	0/0	c0004	2481	3	2	1	0	0	0	copy fasta	STT3B	chr3	31527925	31642616
STT3B_chr3_31527925_31642616	0/0	c0005	2481	2	0	0	2	0	0	copy fasta	STT3B	chr3	31527925	31642616
STT3B_chr3_31527925_31642616	0/0	c0006	2481	2	0	0	2	0	0	copy fasta	STT3B	chr3	31527925	31642616
STT3B_chr3_31527925_31642616	0/0	c0007	2481	1	1	0	0	0	0	copy fasta	STT3B	chr3	31527925	31642616
STT3B_chr3_31527925_31642616	0/0	c0008	2481	1	0	0	1	0	0	copy fasta	STT3B	chr3	31527925	31642616
STT3B_chr3_31527925_31642616	0/0	c0009	2481	1	1	0	0	0	0	copy fasta	STT3B	chr3	31527925	31642616
STT3B_chr3_31527925_31642616	0/0	c0010	2481	1	0	0	1	0	0	copy fasta	STT3B	chr3	31527925	31642616
STUB1_chr16_675410_687801	1/1	c0001	912	348	90	60	140	12	44	copy fasta	STUB1	chr16	675410	687801
STUB1_chr16_675410_687801	0/0	c0002	912	6	4	0	2	0	0	copy fasta	STUB1	chr16	675410	687801
STUB1_chr16_675410_687801	0/0	c0003	912	2	0	0	0	0	2	copy fasta	STUB1	chr16	675410	687801
STUM_chr1_226543764_226614230	1/1	c0001	426	400	94	61	183	12	48	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	c0002	402	1	0	1	0	0	0	copy fasta	STUM	chr1	226543764	226614230
STUM_chr1_226543764_226614230	0/0	c0003	426	1	0	0	1	0	0	copy fasta	STUM	chr1	226543764	226614230
STX10_chr19_13139058_13155375	1/1	c0001	750	326	94	68	104	14	44	copy fasta	STX10	chr19	13139058	13155375
STX10_chr19_13139058_13155375	0/0	c0002	750	1	1	0	0	0	0	copy fasta	STX10	chr19	13139058	13155375
STX10_chr19_13139058_13155375	0/0	c0003	750	1	1	0	0	0	0	copy fasta	STX10	chr19	13139058	13155375
STX11_chr6_144145517_144196939	1/1	c0001	864	347	78	55	177	10	25	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	c0002	864	15	13	2	0	0	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	c0003	864	12	2	0	10	0	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	c0004	864	1	0	0	0	0	1	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	c0005	864	1	0	1	0	0	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	c0006	864	1	0	0	1	0	0	copy fasta	STX11	chr6	144145517	144196939
STX11_chr6_144145517_144196939	0/0	c0007	864	1	1	0	0	0	0	copy fasta	STX11	chr6	144145517	144196939
STX12_chr1_27768219_27829443	1/1	c0001	831	225	82	26	91	6	18	copy fasta	STX12	chr1	27768219	27829443
STX12_chr1_27768219_27829443	0/0	c0002	831	2	2	0	0	0	0	copy fasta	STX12	chr1	27768219	27829443
STX12_chr1_27768219_27829443	0/0	c0003	831	1	0	0	1	0	0	copy fasta	STX12	chr1	27768219	27829443
STX16_chr20_58646283_58684526	0/0	c0001	978	187	49	38	70	7	23	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	1/1	c0002	978	179	34	33	81	7	22	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	c0003	978	9	0	0	9	0	0	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	c0004	978	4	4	0	0	0	0	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	c0005	978	1	0	0	0	0	1	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	c0006	978	1	0	1	0	0	0	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	c0007	978	1	1	0	0	0	0	copy fasta	STX16	chr20	58646283	58684526
STX16_chr20_58646283_58684526	0/0	c0008	978	1	0	0	1	0	0	copy fasta	STX16	chr20	58646283	58684526