JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
STX16_chr20_58646283_58684526	0/0	c0009	978	1	0	0	1	0	0	copy fasta	STX16	chr20	58646283	58684526
STX17_chr9_99901654_99979534	1/1	c0001	909	287	71	70	113	7	24	copy fasta	STX17	chr9	99901654	99979534
STX17_chr9_99901654_99979534	0/0	c0002	909	5	0	4	0	1	0	copy fasta	STX17	chr9	99901654	99979534
STX17_chr9_99901654_99979534	0/0	c0003	909	1	0	0	1	0	0	copy fasta	STX17	chr9	99901654	99979534
STX17_chr9_99901654_99979534	0/0	c0004	909	1	1	0	0	0	0	copy fasta	STX17	chr9	99901654	99979534
STX18_chr4_4413968_4547048	1/1	c0001	1008	220	74	51	60	14	19	copy fasta	STX18	chr4	4413968	4547048
STX18_chr4_4413968_4547048	0/0	c0002	1008	9	9	0	0	0	0	copy fasta	STX18	chr4	4413968	4547048
STX18_chr4_4413968_4547048	0/0	c0003	1008	5	2	2	0	0	1	copy fasta	STX18	chr4	4413968	4547048
STX18_chr4_4413968_4547048	0/0	c0004	1008	5	4	1	0	0	0	copy fasta	STX18	chr4	4413968	4547048
STX18_chr4_4413968_4547048	0/0	c0005	1008	2	2	0	0	0	0	copy fasta	STX18	chr4	4413968	4547048
STX18_chr4_4413968_4547048	0/0	c0006	1008	2	2	0	0	0	0	copy fasta	STX18	chr4	4413968	4547048
STX18_chr4_4413968_4547048	0/0	c0007	1008	1	1	0	0	0	0	copy fasta	STX18	chr4	4413968	4547048
STX18_chr4_4413968_4547048	0/0	c0008	1008	1	1	0	0	0	0	copy fasta	STX18	chr4	4413968	4547048
STX18_chr4_4413968_4547048	0/0	c0009	1008	1	1	0	0	0	0	copy fasta	STX18	chr4	4413968	4547048
STX19_chr3_94009365_94033597	1/1	c0001	885	392	92	76	162	14	46	copy fasta	STX19	chr3	94009365	94033597
STX1A_chr7_73694210_73724669	1/0	c0001	867	212	39	37	103	9	23	copy fasta	STX1A	chr7	73694210	73724669
STX1A_chr7_73694210_73724669	0/1	c0002	867	169	46	34	71	5	12	copy fasta	STX1A	chr7	73694210	73724669
STX1A_chr7_73694210_73724669	0/0	c0003	867	15	5	5	0	2	3	copy fasta	STX1A	chr7	73694210	73724669
STX1A_chr7_73694210_73724669	0/0	c0004	867	4	4	0	0	0	0	copy fasta	STX1A	chr7	73694210	73724669
STX1B_chr16_30984256_31015638	1/1	c0001	867	252	78	46	80	11	35	copy fasta	STX1B	chr16	30984256	31015638
STX1B_chr16_30984256_31015638	0/0	c0002	867	29	7	18	0	3	1	copy fasta	STX1B	chr16	30984256	31015638
STX1B_chr16_30984256_31015638	0/0	c0003	867	1	1	0	0	0	0	copy fasta	STX1B	chr16	30984256	31015638
STX2_chr12_130784600_130844250	0/0	c0001	867	214	18	41	115	8	32	copy fasta	STX2	chr12	130784600	130844250
STX2_chr12_130784600_130844250	1/1	c0002	867	117	51	26	22	3	13	copy fasta	STX2	chr12	130784600	130844250
STX2_chr12_130784600_130844250	0/0	c0003	867	27	14	1	10	0	2	copy fasta	STX2	chr12	130784600	130844250
STX2_chr12_130784600_130844250	0/0	c0004	867	9	2	4	0	2	1	copy fasta	STX2	chr12	130784600	130844250
STX2_chr12_130784600_130844250	0/0	c0005	867	3	3	0	0	0	0	copy fasta	STX2	chr12	130784600	130844250
STX2_chr12_130784600_130844250	0/0	c0006	867	3	3	0	0	0	0	copy fasta	STX2	chr12	130784600	130844250
STX2_chr12_130784600_130844250	0/0	c0007	867	1	0	0	0	1	0	copy fasta	STX2	chr12	130784600	130844250
STX2_chr12_130784600_130844250	0/0	c0008	867	1	0	0	1	0	0	copy fasta	STX2	chr12	130784600	130844250
STX2_chr12_130784600_130844250	0/0	c0009	867	1	0	0	1	0	0	copy fasta	STX2	chr12	130784600	130844250
STX2_chr12_130784600_130844250	0/0	c0010	867	1	0	0	1	0	0	copy fasta	STX2	chr12	130784600	130844250
STX2_chr12_130784600_130844250	0/0	c0011	867	1	1	0	0	0	0	copy fasta	STX2	chr12	130784600	130844250
STX2_chr12_130784600_130844250	0/0	c0012	867	1	1	0	0	0	0	copy fasta	STX2	chr12	130784600	130844250
STX2_chr12_130784600_130844250	0/0	c0013	867	1	1	0	0	0	0	copy fasta	STX2	chr12	130784600	130844250
STX3_chr11_59750376_59810878	1/1	c0001	870	205	66	51	59	3	24	copy fasta	STX3	chr11	59750376	59810878
STX3_chr11_59750376_59810878	0/0	c0002	870	5	4	1	0	0	0	copy fasta	STX3	chr11	59750376	59810878
STX3_chr11_59750376_59810878	0/0	c0003	870	3	3	0	0	0	0	copy fasta	STX3	chr11	59750376	59810878
STX3_chr11_59750376_59810878	0/0	c0004	870	2	2	0	0	0	0	copy fasta	STX3	chr11	59750376	59810878
STX3_chr11_59750376_59810878	0/0	c0005	870	1	0	0	1	0	0	copy fasta	STX3	chr11	59750376	59810878
STX3_chr11_59750376_59810878	0/0	c0006	870	1	1	0	0	0	0	copy fasta	STX3	chr11	59750376	59810878
STX3_chr11_59750376_59810878	0/0	c0007	870	1	0	0	0	1	0	copy fasta	STX3	chr11	59750376	59810878
STX4_chr16_31028558_31045164	1/1	c0001	894	260	82	72	60	12	32	copy fasta	STX4	chr16	31028558	31045164
STX4_chr16_31028558_31045164	0/0	c0002	894	2	0	0	2	0	0	copy fasta	STX4	chr16	31028558	31045164
STX5_chr11_62801860_62837051	1/1	c0001	1068	311	76	55	138	14	26	copy fasta	STX5	chr11	62801860	62837051
STX5_chr11_62801860_62837051	0/0	c0002	1068	49	12	5	30	2	0	copy fasta	STX5	chr11	62801860	62837051
STX5_chr11_62801860_62837051	0/0	c0003	1068	9	0	0	9	0	0	copy fasta	STX5	chr11	62801860	62837051
STX5_chr11_62801860_62837051	0/0	c0004	1068	6	0	0	6	0	0	copy fasta	STX5	chr11	62801860	62837051
STX5_chr11_62801860_62837051	0/0	c0005	1068	1	0	1	0	0	0	copy fasta	STX5	chr11	62801860	62837051
STX5_chr11_62801860_62837051	0/0	c0006	1068	1	0	0	0	0	1	copy fasta	STX5	chr11	62801860	62837051