JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
STX5_chr11_62801860_62837051	0/0	c0007	1068	1	0	0	0	0	1	copy fasta	STX5	chr11	62801860	62837051
STX5_chr11_62801860_62837051	0/0	c0008	1068	1	0	1	0	0	0	copy fasta	STX5	chr11	62801860	62837051
STX5_chr11_62801860_62837051	0/0	c0009	1068	1	0	0	1	0	0	copy fasta	STX5	chr11	62801860	62837051
STX6_chr1_180967725_181027870	0/1	c0001	768	174	16	38	97	7	15	copy fasta	STX6	chr1	180967725	181027870
STX6_chr1_180967725_181027870	1/0	c0002	768	162	56	23	58	3	21	copy fasta	STX6	chr1	180967725	181027870
STX6_chr1_180967725_181027870	0/0	c0003	768	11	9	0	0	2	0	copy fasta	STX6	chr1	180967725	181027870
STX6_chr1_180967725_181027870	0/0	c0004	768	1	0	1	0	0	0	copy fasta	STX6	chr1	180967725	181027870
STX6_chr1_180967725_181027870	0/0	c0005	768	1	1	0	0	0	0	copy fasta	STX6	chr1	180967725	181027870
STX6_chr1_180967725_181027870	0/0	c0006	768	1	0	0	1	0	0	copy fasta	STX6	chr1	180967725	181027870
STX7_chr6_132440867_132518116	1/1	c0001	786	367	96	62	153	12	42	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	c0002	786	11	0	0	11	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	c0003	786	2	0	0	2	0	0	copy fasta	STX7	chr6	132440867	132518116
STX8_chr17_9245471_9580820	0/0	c0001	711	77	5	26	24	6	16	copy fasta	STX8	chr17	9245471	9580820
STX8_chr17_9245471_9580820	1/0	c0002	711	38	27	5	0	0	5	copy fasta	STX8	chr17	9245471	9580820
STX8_chr17_9245471_9580820	0/1	c0003	711	32	21	5	0	2	3	copy fasta	STX8	chr17	9245471	9580820
STX8_chr17_9245471_9580820	0/0	c0004	711	28	13	3	8	0	4	copy fasta	STX8	chr17	9245471	9580820
STX8_chr17_9245471_9580820	0/0	c0005	711	4	4	0	0	0	0	copy fasta	STX8	chr17	9245471	9580820
STX8_chr17_9245471_9580820	0/0	c0006	711	3	0	1	0	2	0	copy fasta	STX8	chr17	9245471	9580820
STX8_chr17_9245471_9580820	0/0	c0007	711	2	0	0	2	0	0	copy fasta	STX8	chr17	9245471	9580820
STX8_chr17_9245471_9580820	0/0	c0008	711	2	2	0	0	0	0	copy fasta	STX8	chr17	9245471	9580820
STX8_chr17_9245471_9580820	0/0	c0009	711	1	1	0	0	0	0	copy fasta	STX8	chr17	9245471	9580820
STX8_chr17_9245471_9580820	0/0	c0010	711	1	1	0	0	0	0	copy fasta	STX8	chr17	9245471	9580820
STXBP1_chr9_127607277_127697699	1/1	c0001	1785	266	53	63	107	10	31	copy fasta	STXBP1	chr9	127607277	127697699
STXBP1_chr9_127607277_127697699	0/0	c0002	1785	25	24	1	0	0	0	copy fasta	STXBP1	chr9	127607277	127697699
STXBP1_chr9_127607277_127697699	0/0	c0003	1785	5	5	0	0	0	0	copy fasta	STXBP1	chr9	127607277	127697699
STXBP1_chr9_127607277_127697699	0/0	c0004	1785	1	1	0	0	0	0	copy fasta	STXBP1	chr9	127607277	127697699
STXBP1_chr9_127607277_127697699	0/0	c0005	1785	1	0	0	1	0	0	copy fasta	STXBP1	chr9	127607277	127697699
STXBP1_chr9_127607277_127697699	0/0	c0006	1785	1	1	0	0	0	0	copy fasta	STXBP1	chr9	127607277	127697699
STXBP1_chr9_127607277_127697699	0/0	c0007	1785	1	0	0	0	0	1	copy fasta	STXBP1	chr9	127607277	127697699
STXBP2_chr19_7632110_7652873	0/0	c0001	1782	222	46	32	125	4	15	copy fasta	STXBP2	chr19	7632110	7652873
STXBP2_chr19_7632110_7652873	0/0	c0002	1782	99	17	26	26	6	24	copy fasta	STXBP2	chr19	7632110	7652873
STXBP2_chr19_7632110_7652873	0/0	c0003	1782	58	22	20	7	4	5	copy fasta	STXBP2	chr19	7632110	7652873
STXBP2_chr19_7632110_7652873	0/0	c0004	1782	8	0	0	8	0	0	copy fasta	STXBP2	chr19	7632110	7652873
STXBP2_chr19_7632110_7652873	0/0	c0005	1782	7	0	0	7	0	0	copy fasta	STXBP2	chr19	7632110	7652873
STXBP2_chr19_7632110_7652873	0/0	c0006	1782	5	4	0	1	0	0	copy fasta	STXBP2	chr19	7632110	7652873
STXBP2_chr19_7632110_7652873	0/0	c0007	1782	5	5	0	0	0	0	copy fasta	STXBP2	chr19	7632110	7652873
STXBP2_chr19_7632110_7652873	0/0	c0008	1782	4	0	0	4	0	0	copy fasta	STXBP2	chr19	7632110	7652873
STXBP2_chr19_7632110_7652873	0/0	c0009	1782	3	3	0	0	0	0	copy fasta	STXBP2	chr19	7632110	7652873
STXBP2_chr19_7632110_7652873	0/0	c0010	1782	3	0	3	0	0	0	copy fasta	STXBP2	chr19	7632110	7652873
STXBP2_chr19_7632110_7652873	0/0	c0011	1782	2	1	1	0	0	0	copy fasta	STXBP2	chr19	7632110	7652873
STXBP2_chr19_7632110_7652873	0/0	c0012	1782	2	0	0	2	0	0	copy fasta	STXBP2	chr19	7632110	7652873
STXBP2_chr19_7632110_7652873	0/0	c0013	1782	1	0	0	0	0	1	copy fasta	STXBP2	chr19	7632110	7652873
STXBP2_chr19_7632110_7652873	0/0	c0014	1782	1	0	0	1	0	0	copy fasta	STXBP2	chr19	7632110	7652873
STXBP2_chr19_7632110_7652873	0/0	c0015	1782	1	1	0	0	0	0	copy fasta	STXBP2	chr19	7632110	7652873
STXBP2_chr19_7632110_7652873	0/0	c0016	1782	1	1	0	0	0	0	copy fasta	STXBP2	chr19	7632110	7652873
STXBP2_chr19_7632110_7652873	0/0	c0017	1782	1	0	0	1	0	0	copy fasta	STXBP2	chr19	7632110	7652873
STXBP2_chr19_7632110_7652873	0/0	c0018	1782	1	0	1	0	0	0	copy fasta	STXBP2	chr19	7632110	7652873
STXBP2_chr19_7632110_7652873	0/0	c0019	1782	1	0	0	1	0	0	copy fasta	STXBP2	chr19	7632110	7652873
STXBP2_chr19_7632110_7652873	0/0	c0020	1782	1	0	0	0	0	1	copy fasta	STXBP2	chr19	7632110	7652873
STXBP2_chr19_7632110_7652873	0/0	c0021	1782	1	0	0	1	0	0	copy fasta	STXBP2	chr19	7632110	7652873