JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
STXBP2_chr19_7632110_7652873	0/0	c0022	1782	1	0	1	0	0	0	copy fasta	STXBP2	chr19	7632110	7652873
STXBP3_chr1_108741674_108814523	1/0	c0001	1779	216	64	40	84	9	18	copy fasta	STXBP3	chr1	108741674	108814523
STXBP3_chr1_108741674_108814523	0/1	c0002	1779	98	26	19	33	5	14	copy fasta	STXBP3	chr1	108741674	108814523
STXBP3_chr1_108741674_108814523	0/0	c0003	1779	14	0	0	11	0	3	copy fasta	STXBP3	chr1	108741674	108814523
STXBP3_chr1_108741674_108814523	0/0	c0004	1779	2	2	0	0	0	0	copy fasta	STXBP3	chr1	108741674	108814523
STXBP3_chr1_108741674_108814523	0/0	c0005	1779	2	2	0	0	0	0	copy fasta	STXBP3	chr1	108741674	108814523
STXBP3_chr1_108741674_108814523	0/0	c0006	1779	1	0	0	0	0	1	copy fasta	STXBP3	chr1	108741674	108814523
STXBP3_chr1_108741674_108814523	0/0	c0007	1779	1	0	1	0	0	0	copy fasta	STXBP3	chr1	108741674	108814523
STXBP4_chr17_54963765_55178632	0/1	c0001	1662	233	54	34	119	1	24	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	c0002	1662	74	6	14	40	3	11	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	1/0	c0003	1662	37	5	15	11	2	3	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	c0004	1662	20	18	2	0	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	c0005	1662	2	2	0	0	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	c0006	1662	2	2	0	0	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	c0007	1662	2	2	0	0	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	c0008	1662	1	1	0	0	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	c0009	1662	1	0	0	1	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	c0010	1662	1	0	1	0	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	c0011	1662	1	0	0	1	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	c0012	1662	1	1	0	0	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	c0013	1662	1	0	0	1	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	c0014	1662	1	1	0	0	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	c0015	1662	1	0	0	1	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP5L_chr3_120903205_121429761	1/1	c0001	3489	239	67	49	82	12	27	copy fasta	STXBP5L	chr3	120903205	121429761
STXBP5L_chr3_120903205_121429761	0/0	c0002	3489	20	0	17	1	0	2	copy fasta	STXBP5L	chr3	120903205	121429761
STXBP5L_chr3_120903205_121429761	0/0	c0003	3489	17	10	1	0	4	2	copy fasta	STXBP5L	chr3	120903205	121429761
STXBP5L_chr3_120903205_121429761	0/0	c0004	3489	4	4	0	0	0	0	copy fasta	STXBP5L	chr3	120903205	121429761
STXBP5L_chr3_120903205_121429761	0/0	c0005	3489	2	2	0	0	0	0	copy fasta	STXBP5L	chr3	120903205	121429761
STXBP5L_chr3_120903205_121429761	0/0	c0006	3489	2	0	0	2	0	0	copy fasta	STXBP5L	chr3	120903205	121429761
STXBP5L_chr3_120903205_121429761	0/0	c0007	3489	1	1	0	0	0	0	copy fasta	STXBP5L	chr3	120903205	121429761
STXBP5L_chr3_120903205_121429761	0/0	c0008	3489	1	1	0	0	0	0	copy fasta	STXBP5L	chr3	120903205	121429761
STXBP5L_chr3_120903205_121429761	0/0	c0009	3489	1	0	0	0	0	1	copy fasta	STXBP5L	chr3	120903205	121429761
STXBP5L_chr3_120903205_121429761	0/0	c0010	3489	1	0	1	0	0	0	copy fasta	STXBP5L	chr3	120903205	121429761
STXBP5L_chr3_120903205_121429761	0/0	c0011	3489	1	0	0	1	0	0	copy fasta	STXBP5L	chr3	120903205	121429761
STXBP5L_chr3_120903205_121429761	0/0	c0012	3489	1	1	0	0	0	0	copy fasta	STXBP5L	chr3	120903205	121429761
STXBP5_chr6_147199417_147395473	1/1	c0001	3456	186	33	25	107	7	12	copy fasta	STXBP5	chr6	147199417	147395473
STXBP5_chr6_147199417_147395473	0/0	c0002	3456	124	28	26	45	6	19	copy fasta	STXBP5	chr6	147199417	147395473
STXBP5_chr6_147199417_147395473	0/0	c0003	3456	11	9	2	0	0	0	copy fasta	STXBP5	chr6	147199417	147395473
STXBP5_chr6_147199417_147395473	0/0	c0004	3456	9	9	0	0	0	0	copy fasta	STXBP5	chr6	147199417	147395473
STXBP5_chr6_147199417_147395473	0/0	c0005	3456	4	3	1	0	0	0	copy fasta	STXBP5	chr6	147199417	147395473
STXBP5_chr6_147199417_147395473	0/0	c0006	3456	4	4	0	0	0	0	copy fasta	STXBP5	chr6	147199417	147395473
STXBP5_chr6_147199417_147395473	0/0	c0007	3456	3	3	0	0	0	0	copy fasta	STXBP5	chr6	147199417	147395473
STXBP5_chr6_147199417_147395473	0/0	c0008	3456	2	0	1	0	0	1	copy fasta	STXBP5	chr6	147199417	147395473
STXBP5_chr6_147199417_147395473	0/0	c0009	3456	1	0	0	1	0	0	copy fasta	STXBP5	chr6	147199417	147395473
STXBP5_chr6_147199417_147395473	0/0	c0010	3456	1	0	1	0	0	0	copy fasta	STXBP5	chr6	147199417	147395473
STXBP5_chr6_147199417_147395473	0/0	c0011	3456	1	0	0	1	0	0	copy fasta	STXBP5	chr6	147199417	147395473
STXBP5_chr6_147199417_147395473	0/0	c0012	3456	1	0	0	1	0	0	copy fasta	STXBP5	chr6	147199417	147395473
STXBP5_chr6_147199417_147395473	0/0	c0013	3456	1	0	0	0	1	0	copy fasta	STXBP5	chr6	147199417	147395473
STXBP5_chr6_147199417_147395473	0/0	c0014	3456	1	0	0	1	0	0	copy fasta	STXBP5	chr6	147199417	147395473
STXBP5_chr6_147199417_147395473	0/0	c0015	3456	1	1	0	0	0	0	copy fasta	STXBP5	chr6	147199417	147395473