JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
STXBP6_chr14_24804454_25055147	1/1	c0001	633	241	76	52	70	8	33	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	c0002	633	1	0	0	0	0	1	copy fasta	STXBP6	chr14	24804454	25055147
STYK1_chr12_10613923_10679052	0/1	c0001	1269	195	28	42	88	10	26	copy fasta	STYK1	chr12	10613923	10679052
STYK1_chr12_10613923_10679052	0/0	c0002	1269	78	6	16	35	6	15	copy fasta	STYK1	chr12	10613923	10679052
STYK1_chr12_10613923_10679052	1/0	c0003	1269	61	49	10	1	0	0	copy fasta	STYK1	chr12	10613923	10679052
STYK1_chr12_10613923_10679052	0/0	c0004	1269	23	0	0	18	2	3	copy fasta	STYK1	chr12	10613923	10679052
STYK1_chr12_10613923_10679052	0/0	c0005	1269	6	4	2	0	0	0	copy fasta	STYK1	chr12	10613923	10679052
STYK1_chr12_10613923_10679052	0/0	c0006	1269	2	2	0	0	0	0	copy fasta	STYK1	chr12	10613923	10679052
STYK1_chr12_10613923_10679052	0/0	c0007	1269	1	0	0	1	0	0	copy fasta	STYK1	chr12	10613923	10679052
STYK1_chr12_10613923_10679052	0/0	c0008	1269	1	0	0	1	0	0	copy fasta	STYK1	chr12	10613923	10679052
STYK1_chr12_10613923_10679052	0/0	c0009	1269	1	1	0	0	0	0	copy fasta	STYK1	chr12	10613923	10679052
STYXL1_chr7_75991342_76053000	1/0	c0001	942	117	33	13	45	5	20	copy fasta	STYXL1	chr7	75991342	76053000
STYXL1_chr7_75991342_76053000	0/0	c0002	942	113	13	26	52	8	14	copy fasta	STYXL1	chr7	75991342	76053000
STYXL1_chr7_75991342_76053000	0/0	c0003	942	73	34	8	29	1	1	copy fasta	STYXL1	chr7	75991342	76053000
STYXL1_chr7_75991342_76053000	0/0	c0004	942	33	0	6	26	0	1	copy fasta	STYXL1	chr7	75991342	76053000
STYXL1_chr7_75991342_76053000	0/1	c0005	942	11	0	5	0	2	3	copy fasta	STYXL1	chr7	75991342	76053000
STYXL1_chr7_75991342_76053000	0/0	c0006	942	4	0	4	0	0	0	copy fasta	STYXL1	chr7	75991342	76053000
STYXL1_chr7_75991342_76053000	0/0	c0007	942	2	2	0	0	0	0	copy fasta	STYXL1	chr7	75991342	76053000
STYXL1_chr7_75991342_76053000	0/0	c0008	942	1	0	1	0	0	0	copy fasta	STYXL1	chr7	75991342	76053000
STYXL1_chr7_75991342_76053000	0/0	c0009	942	1	0	1	0	0	0	copy fasta	STYXL1	chr7	75991342	76053000
STYXL1_chr7_75991342_76053000	0/0	c0010	942	1	0	0	0	0	1	copy fasta	STYXL1	chr7	75991342	76053000
STYXL2_chr1_167089075_167134165	0/0	c0001	3477	120	26	15	73	0	6	copy fasta	STYXL2	chr1	167089075	167134165
STYXL2_chr1_167089075_167134165	1/0	c0002	3477	96	7	36	7	10	35	copy fasta	STYXL2	chr1	167089075	167134165
STYXL2_chr1_167089075_167134165	0/0	c0003	3477	68	38	7	17	3	3	copy fasta	STYXL2	chr1	167089075	167134165
STYXL2_chr1_167089075_167134165	0/1	c0004	3477	15	0	9	0	3	2	copy fasta	STYXL2	chr1	167089075	167134165
STYXL2_chr1_167089075_167134165	0/0	c0005	3477	12	0	0	12	0	0	copy fasta	STYXL2	chr1	167089075	167134165
STYXL2_chr1_167089075_167134165	0/0	c0006	3477	9	9	0	0	0	0	copy fasta	STYXL2	chr1	167089075	167134165
STYXL2_chr1_167089075_167134165	0/0	c0007	3477	4	0	0	4	0	0	copy fasta	STYXL2	chr1	167089075	167134165
STYXL2_chr1_167089075_167134165	0/0	c0008	3477	4	3	1	0	0	0	copy fasta	STYXL2	chr1	167089075	167134165
STYXL2_chr1_167089075_167134165	0/0	c0009	3474	3	0	0	3	0	0	copy fasta	STYXL2	chr1	167089075	167134165
STYXL2_chr1_167089075_167134165	0/0	c0010	3477	3	3	0	0	0	0	copy fasta	STYXL2	chr1	167089075	167134165
STYXL2_chr1_167089075_167134165	0/0	c0011	3477	2	2	0	0	0	0	copy fasta	STYXL2	chr1	167089075	167134165
STYXL2_chr1_167089075_167134165	0/0	c0012	3477	2	0	0	2	0	0	copy fasta	STYXL2	chr1	167089075	167134165
STYXL2_chr1_167089075_167134165	0/0	c0013	3477	2	1	1	0	0	0	copy fasta	STYXL2	chr1	167089075	167134165
STYXL2_chr1_167089075_167134165	0/0	c0014	3477	2	0	2	0	0	0	copy fasta	STYXL2	chr1	167089075	167134165
STYXL2_chr1_167089075_167134165	0/0	c0015	3477	2	2	0	0	0	0	copy fasta	STYXL2	chr1	167089075	167134165
STYXL2_chr1_167089075_167134165	0/0	c0016	3477	1	1	0	0	0	0	copy fasta	STYXL2	chr1	167089075	167134165
STYXL2_chr1_167089075_167134165	0/0	c0017	3477	1	1	0	0	0	0	copy fasta	STYXL2	chr1	167089075	167134165
STYXL2_chr1_167089075_167134165	0/0	c0018	3477	1	1	0	0	0	0	copy fasta	STYXL2	chr1	167089075	167134165
STYXL2_chr1_167089075_167134165	0/0	c0019	3477	1	0	0	1	0	0	copy fasta	STYXL2	chr1	167089075	167134165
STYXL2_chr1_167089075_167134165	0/0	c0020	3477	1	1	0	0	0	0	copy fasta	STYXL2	chr1	167089075	167134165
STYXL2_chr1_167089075_167134165	0/0	c0021	3477	1	0	0	1	0	0	copy fasta	STYXL2	chr1	167089075	167134165
STYXL2_chr1_167089075_167134165	0/0	c0022	3477	1	0	0	1	0	0	copy fasta	STYXL2	chr1	167089075	167134165
STYXL2_chr1_167089075_167134165	0/0	c0023	3477	1	0	1	0	0	0	copy fasta	STYXL2	chr1	167089075	167134165
STYXL2_chr1_167089075_167134165	0/0	c0024	3477	1	0	0	1	0	0	copy fasta	STYXL2	chr1	167089075	167134165
STYXL2_chr1_167089075_167134165	0/0	c0025	3477	1	0	0	1	0	0	copy fasta	STYXL2	chr1	167089075	167134165
STYXL2_chr1_167089075_167134165	0/0	c0026	3477	1	1	0	0	0	0	copy fasta	STYXL2	chr1	167089075	167134165
STYXL2_chr1_167089075_167134165	0/0	c0027	3477	1	0	1	0	0	0	copy fasta	STYXL2	chr1	167089075	167134165
STYXL2_chr1_167089075_167134165	0/0	c0028	3463	1	1	0	0	0	0	copy fasta	STYXL2	chr1	167089075	167134165
STYXL2_chr1_167089075_167134165	0/0	c0029	3477	1	0	1	0	0	0	copy fasta	STYXL2	chr1	167089075	167134165