JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
STYXL2_chr1_167089075_167134165	0/0	c0030	3477	1	0	1	0	0	0	copy fasta	STYXL2	chr1	167089075	167134165
STYXL2_chr1_167089075_167134165	0/0	c0031	3477	1	0	1	0	0	0	copy fasta	STYXL2	chr1	167089075	167134165
STYXL2_chr1_167089075_167134165	0/0	c0032	3477	1	0	0	1	0	0	copy fasta	STYXL2	chr1	167089075	167134165
STYXL2_chr1_167089075_167134165	0/0	c0033	3477	1	1	0	0	0	0	copy fasta	STYXL2	chr1	167089075	167134165
STYX_chr14_52725166_52779989	1/1	c0001	672	368	88	67	161	14	36	copy fasta	STYX	chr14	52725166	52779989
STYX_chr14_52725166_52779989	0/0	c0002	672	1	0	1	0	0	0	copy fasta	STYX	chr14	52725166	52779989
STYX_chr14_52725166_52779989	0/0	c0003	672	1	0	0	1	0	0	copy fasta	STYX	chr14	52725166	52779989
SUB1_chr5_32580557_32609079	1/1	c0001	384	446	92	74	214	16	48	copy fasta	SUB1	chr5	32580557	32609079
SUCLA2_chr13_47937656_48006273	0/1	c0001	1392	204	36	41	88	10	28	copy fasta	SUCLA2	chr13	47937656	48006273
SUCLA2_chr13_47937656_48006273	1/0	c0002	1392	107	32	17	35	6	16	copy fasta	SUCLA2	chr13	47937656	48006273
SUCLA2_chr13_47937656_48006273	0/0	c0003	1392	27	0	10	17	0	0	copy fasta	SUCLA2	chr13	47937656	48006273
SUCLA2_chr13_47937656_48006273	0/0	c0004	1392	6	6	0	0	0	0	copy fasta	SUCLA2	chr13	47937656	48006273
SUCLA2_chr13_47937656_48006273	0/0	c0005	1392	3	3	0	0	0	0	copy fasta	SUCLA2	chr13	47937656	48006273
SUCLA2_chr13_47937656_48006273	0/0	c0006	1392	3	3	0	0	0	0	copy fasta	SUCLA2	chr13	47937656	48006273
SUCLA2_chr13_47937656_48006273	0/0	c0007	1392	2	2	0	0	0	0	copy fasta	SUCLA2	chr13	47937656	48006273
SUCLA2_chr13_47937656_48006273	0/0	c0008	1392	2	2	0	0	0	0	copy fasta	SUCLA2	chr13	47937656	48006273
SUCLA2_chr13_47937656_48006273	0/0	c0009	1392	2	1	1	0	0	0	copy fasta	SUCLA2	chr13	47937656	48006273
SUCLA2_chr13_47937656_48006273	0/0	c0010	1392	1	1	0	0	0	0	copy fasta	SUCLA2	chr13	47937656	48006273
SUCLA2_chr13_47937656_48006273	0/0	c0011	1392	1	0	1	0	0	0	copy fasta	SUCLA2	chr13	47937656	48006273
SUCLG1_chr2_84418528_84464280	1/1	c0001	1041	263	92	62	57	16	34	copy fasta	SUCLG1	chr2	84418528	84464280
SUCLG1_chr2_84418528_84464280	0/0	c0002	1041	1	0	0	1	0	0	copy fasta	SUCLG1	chr2	84418528	84464280
SUCLG2_chr3_67369719_67659612	1/1	c0001	1299	228	52	35	113	4	22	copy fasta	SUCLG2	chr3	67369719	67659612
SUCLG2_chr3_67369719_67659612	0/0	c0002	1299	17	17	0	0	0	0	copy fasta	SUCLG2	chr3	67369719	67659612
SUCLG2_chr3_67369719_67659612	0/0	c0003	1299	11	4	2	4	0	1	copy fasta	SUCLG2	chr3	67369719	67659612
SUCLG2_chr3_67369719_67659612	0/0	c0004	1299	4	3	1	0	0	0	copy fasta	SUCLG2	chr3	67369719	67659612
SUCLG2_chr3_67369719_67659612	0/0	c0005	1299	3	3	0	0	0	0	copy fasta	SUCLG2	chr3	67369719	67659612
SUCLG2_chr3_67369719_67659612	0/0	c0006	1299	3	0	0	3	0	0	copy fasta	SUCLG2	chr3	67369719	67659612
SUCLG2_chr3_67369719_67659612	0/0	c0007	1299	2	2	0	0	0	0	copy fasta	SUCLG2	chr3	67369719	67659612
SUCLG2_chr3_67369719_67659612	0/0	c0008	1299	2	2	0	0	0	0	copy fasta	SUCLG2	chr3	67369719	67659612
SUCLG2_chr3_67369719_67659612	0/0	c0009	1299	1	1	0	0	0	0	copy fasta	SUCLG2	chr3	67369719	67659612
SUCLG2_chr3_67369719_67659612	0/0	c0010	1299	1	0	0	1	0	0	copy fasta	SUCLG2	chr3	67369719	67659612
SUCLG2_chr3_67369719_67659612	0/0	c0011	1299	1	1	0	0	0	0	copy fasta	SUCLG2	chr3	67369719	67659612
SUCLG2_chr3_67369719_67659612	0/0	c0012	1299	1	0	0	1	0	0	copy fasta	SUCLG2	chr3	67369719	67659612
SUCLG2_chr3_67369719_67659612	0/0	c0013	1299	1	0	0	1	0	0	copy fasta	SUCLG2	chr3	67369719	67659612
SUCLG2_chr3_67369719_67659612	0/0	c0014	1299	1	0	0	1	0	0	copy fasta	SUCLG2	chr3	67369719	67659612
SUCLG2_chr3_67369719_67659612	0/0	c0015	1299	1	1	0	0	0	0	copy fasta	SUCLG2	chr3	67369719	67659612
SUCLG2_chr3_67369719_67659612	0/0	c0016	1299	1	1	0	0	0	0	copy fasta	SUCLG2	chr3	67369719	67659612
SUCLG2_chr3_67369719_67659612	0/0	c0017	1299	1	1	0	0	0	0	copy fasta	SUCLG2	chr3	67369719	67659612
SUCLG2_chr3_67369719_67659612	0/0	c0018	1299	1	0	0	0	0	1	copy fasta	SUCLG2	chr3	67369719	67659612
SUCNR1_chr3_151868643_151889619	1/1	c0001	1005	394	72	79	194	16	31	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	c0002	1005	54	20	7	23	0	4	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	c0003	1005	7	0	0	7	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	c0004	1005	1	0	0	0	0	1	copy fasta	SUCNR1	chr3	151868643	151889619
SUCO_chr1_172528150_172616833	1/1	c0001	3765	218	56	33	101	9	17	copy fasta	SUCO	chr1	172528150	172616833
SUCO_chr1_172528150_172616833	0/0	c0002	3765	88	23	19	34	2	10	copy fasta	SUCO	chr1	172528150	172616833
SUCO_chr1_172528150_172616833	0/0	c0003	3765	12	1	9	0	1	1	copy fasta	SUCO	chr1	172528150	172616833
SUCO_chr1_172528150_172616833	0/0	c0004	3765	5	5	0	0	0	0	copy fasta	SUCO	chr1	172528150	172616833
SUCO_chr1_172528150_172616833	0/0	c0005	3765	4	2	0	0	0	2	copy fasta	SUCO	chr1	172528150	172616833
SUCO_chr1_172528150_172616833	0/0	c0006	3765	2	0	0	2	0	0	copy fasta	SUCO	chr1	172528150	172616833
SUCO_chr1_172528150_172616833	0/0	c0007	3765	2	0	0	2	0	0	copy fasta	SUCO	chr1	172528150	172616833