JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SUCO_chr1_172528150_172616833	0/0	c0008	3765	1	0	0	1	0	0	copy fasta	SUCO	chr1	172528150	172616833
SUCO_chr1_172528150_172616833	0/0	c0009	3765	1	0	0	1	0	0	copy fasta	SUCO	chr1	172528150	172616833
SUCO_chr1_172528150_172616833	0/0	c0010	3765	1	1	0	0	0	0	copy fasta	SUCO	chr1	172528150	172616833
SUCO_chr1_172528150_172616833	0/0	c0011	3765	1	0	0	1	0	0	copy fasta	SUCO	chr1	172528150	172616833
SUCO_chr1_172528150_172616833	0/0	c0012	3765	1	1	0	0	0	0	copy fasta	SUCO	chr1	172528150	172616833
SUCO_chr1_172528150_172616833	0/0	c0013	3765	1	1	0	0	0	0	copy fasta	SUCO	chr1	172528150	172616833
SUCO_chr1_172528150_172616833	0/0	c0014	3765	1	0	1	0	0	0	copy fasta	SUCO	chr1	172528150	172616833
SUCO_chr1_172528150_172616833	0/0	c0015	3765	1	1	0	0	0	0	copy fasta	SUCO	chr1	172528150	172616833
SUCO_chr1_172528150_172616833	0/0	c0016	3765	1	1	0	0	0	0	copy fasta	SUCO	chr1	172528150	172616833
SUDS3_chr12_118371555_118423033	1/1	c0001	987	408	92	66	194	18	36	copy fasta	SUDS3	chr12	118371555	118423033
SUFU_chr10_102498972_102638535	1/1	c0001	1455	189	45	47	62	6	27	copy fasta	SUFU	chr10	102498972	102638535
SUFU_chr10_102498972_102638535	0/0	c0002	1455	76	15	9	42	2	8	copy fasta	SUFU	chr10	102498972	102638535
SUFU_chr10_102498972_102638535	0/0	c0003	1455	1	0	0	1	0	0	copy fasta	SUFU	chr10	102498972	102638535
SUFU_chr10_102498972_102638535	0/0	c0004	1455	1	0	0	0	0	1	copy fasta	SUFU	chr10	102498972	102638535
SUFU_chr10_102498972_102638535	0/0	c0005	1455	1	0	0	1	0	0	copy fasta	SUFU	chr10	102498972	102638535
SUGCT_chr7_40130005_40865763	0/0	c0001	1317	6	1	5	0	0	0	copy fasta	SUGCT	chr7	40130005	40865763
SUGCT_chr7_40130005_40865763	0/0	c0002	1317	1	0	1	0	0	0	copy fasta	SUGCT	chr7	40130005	40865763
SUGCT_chr7_40130005_40865763	0/0	c0003	1317	1	1	0	0	0	0	copy fasta	SUGCT	chr7	40130005	40865763
SUGP1_chr19_19271033_19325509	1/1	c0001	1938	245	60	48	94	13	28	copy fasta	SUGP1	chr19	19271033	19325509
SUGP1_chr19_19271033_19325509	0/0	c0002	1938	25	2	2	16	1	4	copy fasta	SUGP1	chr19	19271033	19325509
SUGP1_chr19_19271033_19325509	0/0	c0003	1938	20	0	10	0	2	8	copy fasta	SUGP1	chr19	19271033	19325509
SUGP1_chr19_19271033_19325509	0/0	c0004	1938	19	18	1	0	0	0	copy fasta	SUGP1	chr19	19271033	19325509
SUGP1_chr19_19271033_19325509	0/0	c0005	1938	6	6	0	0	0	0	copy fasta	SUGP1	chr19	19271033	19325509
SUGP1_chr19_19271033_19325509	0/0	c0006	1938	3	3	0	0	0	0	copy fasta	SUGP1	chr19	19271033	19325509
SUGP1_chr19_19271033_19325509	0/0	c0007	1938	3	0	3	0	0	0	copy fasta	SUGP1	chr19	19271033	19325509
SUGP1_chr19_19271033_19325509	0/0	c0008	1938	2	2	0	0	0	0	copy fasta	SUGP1	chr19	19271033	19325509
SUGP1_chr19_19271033_19325509	0/0	c0009	1938	2	2	0	0	0	0	copy fasta	SUGP1	chr19	19271033	19325509
SUGP1_chr19_19271033_19325509	0/0	c0010	1938	1	0	1	0	0	0	copy fasta	SUGP1	chr19	19271033	19325509
SUGP1_chr19_19271033_19325509	0/0	c0011	1938	1	1	0	0	0	0	copy fasta	SUGP1	chr19	19271033	19325509
SUGP1_chr19_19271033_19325509	0/0	c0012	1938	1	0	0	1	0	0	copy fasta	SUGP1	chr19	19271033	19325509
SUGP1_chr19_19271033_19325509	0/0	c0013	1938	1	0	1	0	0	0	copy fasta	SUGP1	chr19	19271033	19325509
SUGP1_chr19_19271033_19325509	0/0	c0014	1938	1	0	0	0	0	1	copy fasta	SUGP1	chr19	19271033	19325509
SUGP1_chr19_19271033_19325509	0/0	c0015	1938	1	0	0	1	0	0	copy fasta	SUGP1	chr19	19271033	19325509
SUGP1_chr19_19271033_19325509	0/0	c0016	1938	1	0	0	0	0	1	copy fasta	SUGP1	chr19	19271033	19325509
SUGP2_chr19_18985893_19038517	0/1	c0001	3249	192	39	43	78	7	24	copy fasta	SUGP2	chr19	18985893	19038517
SUGP2_chr19_18985893_19038517	1/0	c0002	3249	58	12	9	25	1	10	copy fasta	SUGP2	chr19	18985893	19038517
SUGP2_chr19_18985893_19038517	0/0	c0003	3249	12	2	5	0	2	3	copy fasta	SUGP2	chr19	18985893	19038517
SUGP2_chr19_18985893_19038517	0/0	c0004	3249	9	9	0	0	0	0	copy fasta	SUGP2	chr19	18985893	19038517
SUGP2_chr19_18985893_19038517	0/0	c0005	3249	7	5	2	0	0	0	copy fasta	SUGP2	chr19	18985893	19038517
SUGP2_chr19_18985893_19038517	0/0	c0006	3249	5	5	0	0	0	0	copy fasta	SUGP2	chr19	18985893	19038517
SUGP2_chr19_18985893_19038517	0/0	c0007	3249	4	4	0	0	0	0	copy fasta	SUGP2	chr19	18985893	19038517
SUGP2_chr19_18985893_19038517	0/0	c0008	3249	3	0	0	3	0	0	copy fasta	SUGP2	chr19	18985893	19038517
SUGP2_chr19_18985893_19038517	0/0	c0009	3249	3	3	0	0	0	0	copy fasta	SUGP2	chr19	18985893	19038517
SUGP2_chr19_18985893_19038517	0/0	c0010	3249	1	1	0	0	0	0	copy fasta	SUGP2	chr19	18985893	19038517
SUGP2_chr19_18985893_19038517	0/0	c0011	3249	1	1	0	0	0	0	copy fasta	SUGP2	chr19	18985893	19038517
SUGP2_chr19_18985893_19038517	0/0	c0012	3249	1	0	1	0	0	0	copy fasta	SUGP2	chr19	18985893	19038517
SUGP2_chr19_18985893_19038517	0/0	c0013	3249	1	1	0	0	0	0	copy fasta	SUGP2	chr19	18985893	19038517
SUGP2_chr19_18985893_19038517	0/0	c0014	3249	1	1	0	0	0	0	copy fasta	SUGP2	chr19	18985893	19038517
SUGP2_chr19_18985893_19038517	0/0	c0015	3249	1	1	0	0	0	0	copy fasta	SUGP2	chr19	18985893	19038517
SUGP2_chr19_18985893_19038517	0/0	c0016	3249	1	0	0	0	0	1	copy fasta	SUGP2	chr19	18985893	19038517