JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SUGP2_chr19_18985893_19038517	0/0	c0017	3249	1	1	0	0	0	0	copy fasta	SUGP2	chr19	18985893	19038517
SUGP2_chr19_18985893_19038517	0/0	c0018	3249	1	1	0	0	0	0	copy fasta	SUGP2	chr19	18985893	19038517
SUGT1_chr13_52647836_52705909	1/1	c0001	1002	304	81	67	108	14	32	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	c0002	1002	4	3	1	0	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	c0003	1002	1	0	0	0	0	1	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	c0004	1002	1	0	0	0	0	1	copy fasta	SUGT1	chr13	52647836	52705909
SULF1_chr8_69487847_69665912	1/1	c0001	2616	262	62	55	98	14	31	copy fasta	SULF1	chr8	69487847	69665912
SULF1_chr8_69487847_69665912	0/0	c0002	2616	9	9	0	0	0	0	copy fasta	SULF1	chr8	69487847	69665912
SULF1_chr8_69487847_69665912	0/0	c0003	2616	5	5	0	0	0	0	copy fasta	SULF1	chr8	69487847	69665912
SULF1_chr8_69487847_69665912	0/0	c0004	2616	5	5	0	0	0	0	copy fasta	SULF1	chr8	69487847	69665912
SULF1_chr8_69487847_69665912	0/0	c0005	2613	3	0	0	3	0	0	copy fasta	SULF1	chr8	69487847	69665912
SULF1_chr8_69487847_69665912	0/0	c0006	2616	3	1	2	0	0	0	copy fasta	SULF1	chr8	69487847	69665912
SULF1_chr8_69487847_69665912	0/0	c0007	2616	2	2	0	0	0	0	copy fasta	SULF1	chr8	69487847	69665912
SULF1_chr8_69487847_69665912	0/0	c0008	2616	2	2	0	0	0	0	copy fasta	SULF1	chr8	69487847	69665912
SULF1_chr8_69487847_69665912	0/0	c0009	2616	1	0	0	0	0	1	copy fasta	SULF1	chr8	69487847	69665912
SULF1_chr8_69487847_69665912	0/0	c0010	2616	1	1	0	0	0	0	copy fasta	SULF1	chr8	69487847	69665912
SULF1_chr8_69487847_69665912	0/0	c0011	2616	1	1	0	0	0	0	copy fasta	SULF1	chr8	69487847	69665912
SULF1_chr8_69487847_69665912	0/0	c0012	2616	1	0	1	0	0	0	copy fasta	SULF1	chr8	69487847	69665912
SULF1_chr8_69487847_69665912	0/0	c0013	2616	1	0	0	1	0	0	copy fasta	SULF1	chr8	69487847	69665912
SULF2_chr20_47652406_47790481	0/1	c0001	2613	201	64	23	91	7	15	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	1/0	c0002	2613	114	15	25	47	2	24	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	c0003	2613	15	0	9	0	1	5	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	c0004	2613	3	0	0	3	0	0	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	c0005	2613	2	1	1	0	0	0	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	c0006	2613	2	0	2	0	0	0	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	c0007	2613	1	0	0	0	0	1	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	c0008	2613	1	0	1	0	0	0	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	c0009	2613	1	0	1	0	0	0	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	c0010	2613	1	0	0	1	0	0	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	c0011	2613	1	1	0	0	0	0	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	c0012	2613	1	0	0	1	0	0	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	c0013	2613	1	1	0	0	0	0	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	c0014	2613	1	0	0	0	0	1	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	c0015	2613	1	0	0	1	0	0	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	c0016	2613	1	1	0	0	0	0	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	c0017	2613	1	1	0	0	0	0	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	c0018	2613	1	0	0	1	0	0	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	c0019	2613	1	0	0	1	0	0	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	c0020	2613	1	0	0	1	0	0	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	c0021	2613	1	0	0	1	0	0	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	c0022	2613	1	1	0	0	0	0	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	c0023	2613	1	0	0	1	0	0	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	c0024	2613	1	0	0	0	0	1	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	c0025	2613	1	0	0	1	0	0	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	c0026	2613	1	0	0	0	0	1	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	c0027	2613	1	0	0	1	0	0	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	c0028	2613	1	0	0	1	0	0	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	c0029	2613	1	1	0	0	0	0	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	c0030	2613	1	0	0	1	0	0	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	c0031	2613	1	1	0	0	0	0	copy fasta	SULF2	chr20	47652406	47790481