JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SULF2_chr20_47652406_47790481	0/0	c0032	2613	1	1	0	0	0	0	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	c0033	2613	1	0	0	1	0	0	copy fasta	SULF2	chr20	47652406	47790481
SULT1A1_chr16_28600258_28615044	0/0	c0000	0	2	0	0	1	0	1	copy fasta	SULT1A1	chr16	28600258	28615044
SULT1A1_chr16_28600258_28615044	0/0	c0001	888	269	25	34	163	7	40	copy fasta	SULT1A1	chr16	28600258	28615044
SULT1A1_chr16_28600258_28615044	0/1	c0002	888	94	28	38	18	5	4	copy fasta	SULT1A1	chr16	28600258	28615044
SULT1A1_chr16_28600258_28615044	1/0	c0003	888	32	29	1	1	0	0	copy fasta	SULT1A1	chr16	28600258	28615044
SULT1A1_chr16_28600258_28615044	0/0	c0004	888	13	0	8	4	0	1	copy fasta	SULT1A1	chr16	28600258	28615044
SULT1A1_chr16_28600258_28615044	0/0	c0005	888	3	0	0	3	0	0	copy fasta	SULT1A1	chr16	28600258	28615044
SULT1A1_chr16_28600258_28615044	0/0	c0006	888	3	3	0	0	0	0	copy fasta	SULT1A1	chr16	28600258	28615044
SULT1A1_chr16_28600258_28615044	0/0	c0007	888	3	2	1	0	0	0	copy fasta	SULT1A1	chr16	28600258	28615044
SULT1A1_chr16_28600258_28615044	0/0	c0008	888	2	1	0	0	1	0	copy fasta	SULT1A1	chr16	28600258	28615044
SULT1A1_chr16_28600258_28615044	0/0	c0009	888	2	2	0	0	0	0	copy fasta	SULT1A1	chr16	28600258	28615044
SULT1A1_chr16_28600258_28615044	0/0	c0010	888	1	1	0	0	0	0	copy fasta	SULT1A1	chr16	28600258	28615044
SULT1A1_chr16_28600258_28615044	0/0	c0011	888	1	0	0	0	1	0	copy fasta	SULT1A1	chr16	28600258	28615044
SULT1A1_chr16_28600258_28615044	0/0	c0012	888	1	0	0	1	0	0	copy fasta	SULT1A1	chr16	28600258	28615044
SULT1A1_chr16_28600258_28615044	0/0	c0013	888	1	1	0	0	0	0	copy fasta	SULT1A1	chr16	28600258	28615044
SULT1A1_chr16_28600258_28615044	0/0	c0014	888	1	1	0	0	0	0	copy fasta	SULT1A1	chr16	28600258	28615044
SULT1A1_chr16_28600258_28615044	0/0	c0015	888	1	0	0	1	0	0	copy fasta	SULT1A1	chr16	28600258	28615044
SULT1A1_chr16_28600258_28615044	0/0	c0016	888	1	0	0	1	0	0	copy fasta	SULT1A1	chr16	28600258	28615044
SULT1A1_chr16_28600258_28615044	0/0	c0017	888	1	0	0	1	0	0	copy fasta	SULT1A1	chr16	28600258	28615044
SULT1A1_chr16_28600258_28615044	0/0	c0018	888	1	1	0	0	0	0	copy fasta	SULT1A1	chr16	28600258	28615044
SULT1A2_chr16_28586943_28602050	0/0	c0001	888	258	49	31	137	5	36	copy fasta	SULT1A2	chr16	28586943	28602050
SULT1A2_chr16_28586943_28602050	0/1	c0002	888	98	17	42	28	5	5	copy fasta	SULT1A2	chr16	28586943	28602050
SULT1A2_chr16_28586943_28602050	0/0	c0003	888	16	2	6	1	3	4	copy fasta	SULT1A2	chr16	28586943	28602050
SULT1A2_chr16_28586943_28602050	1/0	c0004	888	8	7	0	0	0	0	copy fasta	SULT1A2	chr16	28586943	28602050
SULT1A2_chr16_28586943_28602050	0/0	c0005	888	6	0	0	6	0	0	copy fasta	SULT1A2	chr16	28586943	28602050
SULT1A2_chr16_28586943_28602050	0/0	c0006	889	5	5	0	0	0	0	copy fasta	SULT1A2	chr16	28586943	28602050
SULT1A2_chr16_28586943_28602050	0/0	c0007	888	4	1	0	1	1	1	copy fasta	SULT1A2	chr16	28586943	28602050
SULT1A2_chr16_28586943_28602050	0/0	c0008	888	3	3	0	0	0	0	copy fasta	SULT1A2	chr16	28586943	28602050
SULT1A2_chr16_28586943_28602050	0/0	c0009	888	3	0	0	3	0	0	copy fasta	SULT1A2	chr16	28586943	28602050
SULT1A2_chr16_28586943_28602050	0/0	c0010	888	2	2	0	0	0	0	copy fasta	SULT1A2	chr16	28586943	28602050
SULT1A2_chr16_28586943_28602050	0/0	c0011	888	2	2	0	0	0	0	copy fasta	SULT1A2	chr16	28586943	28602050
SULT1A2_chr16_28586943_28602050	0/0	c0012	888	2	0	0	2	0	0	copy fasta	SULT1A2	chr16	28586943	28602050
SULT1A2_chr16_28586943_28602050	0/0	c0013	888	1	1	0	0	0	0	copy fasta	SULT1A2	chr16	28586943	28602050
SULT1A2_chr16_28586943_28602050	0/0	c0014	888	1	1	0	0	0	0	copy fasta	SULT1A2	chr16	28586943	28602050
SULT1A2_chr16_28586943_28602050	0/0	c0015	888	1	1	0	0	0	0	copy fasta	SULT1A2	chr16	28586943	28602050
SULT1A2_chr16_28586943_28602050	0/0	c0016	888	1	0	1	0	0	0	copy fasta	SULT1A2	chr16	28586943	28602050
SULT1A2_chr16_28586943_28602050	0/0	c0017	888	1	1	0	0	0	0	copy fasta	SULT1A2	chr16	28586943	28602050
SULT1A2_chr16_28586943_28602050	0/0	c0018	888	1	0	0	0	0	1	copy fasta	SULT1A2	chr16	28586943	28602050
SULT1A2_chr16_28586943_28602050	0/0	c0019	888	1	0	0	1	0	0	copy fasta	SULT1A2	chr16	28586943	28602050
SULT1A2_chr16_28586943_28602050	0/0	c0020	888	1	0	0	1	0	0	copy fasta	SULT1A2	chr16	28586943	28602050
SULT1A2_chr16_28586943_28602050	0/0	c0021	888	1	1	0	0	0	0	copy fasta	SULT1A2	chr16	28586943	28602050
SULT1A2_chr16_28586943_28602050	0/0	c0022	888	1	0	0	0	0	1	copy fasta	SULT1A2	chr16	28586943	28602050
SULT1A2_chr16_28586943_28602050	0/0	c0023	888	1	1	0	0	0	0	copy fasta	SULT1A2	chr16	28586943	28602050
SULT1A3_chr16_30194255_30209310	0/0	c0001	888	118	24	20	52	6	16	copy fasta	SULT1A3	chr16	30194255	30209310
SULT1A3_chr16_30194255_30209310	0/0	c0002	888	16	1	0	13	0	2	copy fasta	SULT1A3	chr16	30194255	30209310
SULT1A3_chr16_30194255_30209310	0/0	c0003	888	16	0	6	3	2	5	copy fasta	SULT1A3	chr16	30194255	30209310
SULT1A3_chr16_30194255_30209310	0/0	c0004	888	1	1	0	0	0	0	copy fasta	SULT1A3	chr16	30194255	30209310
SULT1A3_chr16_30194255_30209310	0/0	c0005	888	1	0	0	0	0	1	copy fasta	SULT1A3	chr16	30194255	30209310
SULT1A3_chr16_30194255_30209310	0/0	c0006	888	1	1	0	0	0	0	copy fasta	SULT1A3	chr16	30194255	30209310