JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SULT1A3_chr16_30194255_30209310	0/0	c0007	888	1	1	0	0	0	0	copy fasta	SULT1A3	chr16	30194255	30209310
SULT1A4_chr16_29454913_29469966	0/0	c0001	888	124	25	35	43	5	16	copy fasta	SULT1A4	chr16	29454913	29469966
SULT1A4_chr16_29454913_29469966	0/0	c0002	888	27	1	1	22	0	3	copy fasta	SULT1A4	chr16	29454913	29469966
SULT1A4_chr16_29454913_29469966	0/0	c0003	888	15	0	7	5	1	2	copy fasta	SULT1A4	chr16	29454913	29469966
SULT1A4_chr16_29454913_29469966	0/0	c0004	888	2	2	0	0	0	0	copy fasta	SULT1A4	chr16	29454913	29469966
SULT1A4_chr16_29454913_29469966	0/0	c0005	888	1	1	0	0	0	0	copy fasta	SULT1A4	chr16	29454913	29469966
SULT1A4_chr16_29454913_29469966	0/0	c0006	888	1	0	0	0	0	1	copy fasta	SULT1A4	chr16	29454913	29469966
SULT1A4_chr16_29454913_29469966	0/0	c0007	888	1	0	0	1	0	0	copy fasta	SULT1A4	chr16	29454913	29469966
SULT1A4_chr16_29454913_29469966	0/0	c0008	888	1	0	0	1	0	0	copy fasta	SULT1A4	chr16	29454913	29469966
SULT1A4_chr16_29454913_29469966	0/0	c0009	888	1	0	1	0	0	0	copy fasta	SULT1A4	chr16	29454913	29469966
SULT1A4_chr16_29454913_29469966	0/0	c0010	888	1	1	0	0	0	0	copy fasta	SULT1A4	chr16	29454913	29469966
SULT1B1_chr4_69716167_69765620	1/1	c0001	891	396	75	71	196	16	36	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	c0002	891	7	7	0	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	c0003	891	2	1	1	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	c0004	891	1	0	0	1	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	c0005	891	1	1	0	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	c0006	891	1	0	0	1	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1C2_chr2_108283895_108314915	1/1	c0001	891	297	81	63	96	12	43	copy fasta	SULT1C2	chr2	108283895	108314915
SULT1C2_chr2_108283895_108314915	0/0	c0002	891	27	3	5	17	2	0	copy fasta	SULT1C2	chr2	108283895	108314915
SULT1C2_chr2_108283895_108314915	0/0	c0003	890	6	6	0	0	0	0	copy fasta	SULT1C2	chr2	108283895	108314915
SULT1C2_chr2_108283895_108314915	0/0	c0004	891	3	0	0	1	0	2	copy fasta	SULT1C2	chr2	108283895	108314915
SULT1C2_chr2_108283895_108314915	0/0	c0005	891	1	0	0	1	0	0	copy fasta	SULT1C2	chr2	108283895	108314915
SULT1C2_chr2_108283895_108314915	0/0	c0006	891	1	0	0	1	0	0	copy fasta	SULT1C2	chr2	108283895	108314915
SULT1C2_chr2_108283895_108314915	0/0	c0007	891	1	1	0	0	0	0	copy fasta	SULT1C2	chr2	108283895	108314915
SULT1C2_chr2_108283895_108314915	0/0	c0008	891	1	1	0	0	0	0	copy fasta	SULT1C2	chr2	108283895	108314915
SULT1C2_chr2_108283895_108314915	0/0	c0009	891	1	1	0	0	0	0	copy fasta	SULT1C2	chr2	108283895	108314915
SULT1C2_chr2_108283895_108314915	0/0	c0010	891	1	0	0	0	0	1	copy fasta	SULT1C2	chr2	108283895	108314915
SULT1C2_chr2_108283895_108314915	0/0	c0011	890	1	1	0	0	0	0	copy fasta	SULT1C2	chr2	108283895	108314915
SULT1C2_chr2_108283895_108314915	0/0	c0012	891	1	1	0	0	0	0	copy fasta	SULT1C2	chr2	108283895	108314915
SULT1C2_chr2_108283895_108314915	0/0	c0013	891	1	1	0	0	0	0	copy fasta	SULT1C2	chr2	108283895	108314915
SULT1C3_chr2_108234968_108265886	0/0	c0001	915	155	19	30	93	3	10	copy fasta	SULT1C3	chr2	108234968	108265886
SULT1C3_chr2_108234968_108265886	0/1	c0002	893	53	1	16	16	5	14	copy fasta	SULT1C3	chr2	108234968	108265886
SULT1C3_chr2_108234968_108265886	1/0	c0003	915	41	0	13	11	7	9	copy fasta	SULT1C3	chr2	108234968	108265886
SULT1C3_chr2_108234968_108265886	0/0	c0004	915	36	20	6	10	0	0	copy fasta	SULT1C3	chr2	108234968	108265886
SULT1C3_chr2_108234968_108265886	0/0	c0005	915	31	9	3	11	1	7	copy fasta	SULT1C3	chr2	108234968	108265886
SULT1C3_chr2_108234968_108265886	0/0	c0006	915	5	2	0	0	0	3	copy fasta	SULT1C3	chr2	108234968	108265886
SULT1C3_chr2_108234968_108265886	0/0	c0007	915	4	0	2	2	0	0	copy fasta	SULT1C3	chr2	108234968	108265886
SULT1C3_chr2_108234968_108265886	0/0	c0008	915	4	4	0	0	0	0	copy fasta	SULT1C3	chr2	108234968	108265886
SULT1C3_chr2_108234968_108265886	0/0	c0009	915	4	4	0	0	0	0	copy fasta	SULT1C3	chr2	108234968	108265886
SULT1C3_chr2_108234968_108265886	0/0	c0010	915	4	4	0	0	0	0	copy fasta	SULT1C3	chr2	108234968	108265886
SULT1C3_chr2_108234968_108265886	0/0	c0011	915	4	3	1	0	0	0	copy fasta	SULT1C3	chr2	108234968	108265886
SULT1C3_chr2_108234968_108265886	0/0	c0012	915	4	4	0	0	0	0	copy fasta	SULT1C3	chr2	108234968	108265886
SULT1C3_chr2_108234968_108265886	0/0	c0013	915	4	4	0	0	0	0	copy fasta	SULT1C3	chr2	108234968	108265886
SULT1C3_chr2_108234968_108265886	0/0	c0014	915	4	4	0	0	0	0	copy fasta	SULT1C3	chr2	108234968	108265886
SULT1C3_chr2_108234968_108265886	0/0	c0015	915	4	4	0	0	0	0	copy fasta	SULT1C3	chr2	108234968	108265886
SULT1C3_chr2_108234968_108265886	0/0	c0016	915	3	0	0	3	0	0	copy fasta	SULT1C3	chr2	108234968	108265886
SULT1C3_chr2_108234968_108265886	0/0	c0017	915	2	2	0	0	0	0	copy fasta	SULT1C3	chr2	108234968	108265886
SULT1C3_chr2_108234968_108265886	0/0	c0018	893	1	0	0	0	0	1	copy fasta	SULT1C3	chr2	108234968	108265886
SULT1C3_chr2_108234968_108265886	0/0	c0019	915	1	1	0	0	0	0	copy fasta	SULT1C3	chr2	108234968	108265886
SULT1C3_chr2_108234968_108265886	0/0	c0020	915	1	0	0	1	0	0	copy fasta	SULT1C3	chr2	108234968	108265886