JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SULT1C3_chr2_108234968_108265886	0/0	c0021	915	1	1	0	0	0	0	copy fasta	SULT1C3	chr2	108234968	108265886
SULT1C3_chr2_108234968_108265886	0/0	c0022	893	1	0	0	1	0	0	copy fasta	SULT1C3	chr2	108234968	108265886
SULT1C3_chr2_108234968_108265886	0/0	c0023	915	1	0	0	1	0	0	copy fasta	SULT1C3	chr2	108234968	108265886
SULT1C3_chr2_108234968_108265886	0/0	c0024	915	1	0	0	1	0	0	copy fasta	SULT1C3	chr2	108234968	108265886
SULT1C3_chr2_108234968_108265886	0/0	c0025	915	1	1	0	0	0	0	copy fasta	SULT1C3	chr2	108234968	108265886
SULT1C3_chr2_108234968_108265886	0/0	c0026	915	1	1	0	0	0	0	copy fasta	SULT1C3	chr2	108234968	108265886
SULT1C3_chr2_108234968_108265886	0/0	c0027	896	1	0	0	1	0	0	copy fasta	SULT1C3	chr2	108234968	108265886
SULT1C3_chr2_108234968_108265886	0/0	c0028	915	1	1	0	0	0	0	copy fasta	SULT1C3	chr2	108234968	108265886
SULT1C3_chr2_108234968_108265886	0/0	c0029	915	1	1	0	0	0	0	copy fasta	SULT1C3	chr2	108234968	108265886
SULT1C3_chr2_108234968_108265886	0/0	c0030	902	1	0	0	1	0	0	copy fasta	SULT1C3	chr2	108234968	108265886
SULT1C3_chr2_108234968_108265886	0/0	c0031	893	1	0	1	0	0	0	copy fasta	SULT1C3	chr2	108234968	108265886
SULT1C4_chr2_108372954_108393989	0/0	c0001	909	167	82	20	39	4	22	copy fasta	SULT1C4	chr2	108372954	108393989
SULT1C4_chr2_108372954_108393989	1/1	c0002	909	157	11	42	74	10	18	copy fasta	SULT1C4	chr2	108372954	108393989
SULT1C4_chr2_108372954_108393989	0/0	c0003	909	1	0	0	1	0	0	copy fasta	SULT1C4	chr2	108372954	108393989
SULT1C4_chr2_108372954_108393989	0/0	c0004	909	1	1	0	0	0	0	copy fasta	SULT1C4	chr2	108372954	108393989
SULT1E1_chr4_69836212_69865145	1/1	c0001	885	440	84	73	224	18	39	copy fasta	SULT1E1	chr4	69836212	69865145
SULT1E1_chr4_69836212_69865145	0/0	c0002	885	2	1	1	0	0	0	copy fasta	SULT1E1	chr4	69836212	69865145
SULT1E1_chr4_69836212_69865145	0/0	c0003	885	1	1	0	0	0	0	copy fasta	SULT1E1	chr4	69836212	69865145
SULT1E1_chr4_69836212_69865145	0/0	c0004	885	1	1	0	0	0	0	copy fasta	SULT1E1	chr4	69836212	69865145
SULT1E1_chr4_69836212_69865145	0/0	c0005	885	1	0	0	0	0	1	copy fasta	SULT1E1	chr4	69836212	69865145
SULT1E1_chr4_69836212_69865145	0/0	c0006	885	1	1	0	0	0	0	copy fasta	SULT1E1	chr4	69836212	69865145
SULT2A1_chr19_47865467_47891315	1/1	c0001	858	401	56	79	200	16	48	copy fasta	SULT2A1	chr19	47865467	47891315
SULT2A1_chr19_47865467_47891315	0/0	c0002	858	12	10	2	0	0	0	copy fasta	SULT2A1	chr19	47865467	47891315
SULT2A1_chr19_47865467_47891315	0/0	c0003	858	11	10	1	0	0	0	copy fasta	SULT2A1	chr19	47865467	47891315
SULT2A1_chr19_47865467_47891315	0/0	c0004	858	3	3	0	0	0	0	copy fasta	SULT2A1	chr19	47865467	47891315
SULT2A1_chr19_47865467_47891315	0/0	c0005	858	1	1	0	0	0	0	copy fasta	SULT2A1	chr19	47865467	47891315
SULT2A1_chr19_47865467_47891315	0/0	c0006	858	1	1	0	0	0	0	copy fasta	SULT2A1	chr19	47865467	47891315
SULT2A1_chr19_47865467_47891315	0/0	c0007	858	1	0	0	1	0	0	copy fasta	SULT2A1	chr19	47865467	47891315
SULT2A1_chr19_47865467_47891315	0/0	c0008	858	1	1	0	0	0	0	copy fasta	SULT2A1	chr19	47865467	47891315
SULT2A1_chr19_47865467_47891315	0/0	c0009	858	1	0	0	1	0	0	copy fasta	SULT2A1	chr19	47865467	47891315
SULT2B1_chr19_48547172_48604423	1/0	c0001	1098	138	48	12	66	1	10	copy fasta	SULT2B1	chr19	48547172	48604423
SULT2B1_chr19_48547172_48604423	0/0	c0002	1098	78	8	26	26	4	14	copy fasta	SULT2B1	chr19	48547172	48604423
SULT2B1_chr19_48547172_48604423	0/0	c0003	1098	51	3	20	26	0	2	copy fasta	SULT2B1	chr19	48547172	48604423
SULT2B1_chr19_48547172_48604423	0/1	c0004	1098	41	13	8	13	3	3	copy fasta	SULT2B1	chr19	48547172	48604423
SULT2B1_chr19_48547172_48604423	0/0	c0005	1098	19	4	7	0	2	6	copy fasta	SULT2B1	chr19	48547172	48604423
SULT2B1_chr19_48547172_48604423	0/0	c0006	1098	9	7	1	0	0	1	copy fasta	SULT2B1	chr19	48547172	48604423
SULT2B1_chr19_48547172_48604423	0/0	c0007	1098	9	5	4	0	0	0	copy fasta	SULT2B1	chr19	48547172	48604423
SULT2B1_chr19_48547172_48604423	0/0	c0008	1098	8	0	0	8	0	0	copy fasta	SULT2B1	chr19	48547172	48604423
SULT2B1_chr19_48547172_48604423	0/0	c0009	1098	6	0	2	0	1	3	copy fasta	SULT2B1	chr19	48547172	48604423
SULT2B1_chr19_48547172_48604423	0/0	c0010	1098	4	3	1	0	0	0	copy fasta	SULT2B1	chr19	48547172	48604423
SULT2B1_chr19_48547172_48604423	0/0	c0011	1098	2	2	0	0	0	0	copy fasta	SULT2B1	chr19	48547172	48604423
SULT2B1_chr19_48547172_48604423	0/0	c0012	1098	2	2	0	0	0	0	copy fasta	SULT2B1	chr19	48547172	48604423
SULT2B1_chr19_48547172_48604423	0/0	c0013	1098	1	0	0	1	0	0	copy fasta	SULT2B1	chr19	48547172	48604423
SULT2B1_chr19_48547172_48604423	0/0	c0014	1098	1	0	0	0	1	0	copy fasta	SULT2B1	chr19	48547172	48604423
SULT2B1_chr19_48547172_48604423	0/0	c0015	1080	1	0	0	1	0	0	copy fasta	SULT2B1	chr19	48547172	48604423
SULT2B1_chr19_48547172_48604423	0/0	c0016	1098	1	0	1	0	0	0	copy fasta	SULT2B1	chr19	48547172	48604423
SULT2B1_chr19_48547172_48604423	0/0	c0017	1098	1	1	0	0	0	0	copy fasta	SULT2B1	chr19	48547172	48604423
SULT2B1_chr19_48547172_48604423	0/0	c0018	1098	1	0	0	1	0	0	copy fasta	SULT2B1	chr19	48547172	48604423
SULT2B1_chr19_48547172_48604423	0/0	c0019	1098	1	1	0	0	0	0	copy fasta	SULT2B1	chr19	48547172	48604423
SULT2B1_chr19_48547172_48604423	0/0	c0020	1098	1	1	0	0	0	0	copy fasta	SULT2B1	chr19	48547172	48604423