JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SULT2B1_chr19_48547172_48604423	0/0	c0021	1098	1	0	0	0	0	1	copy fasta	SULT2B1	chr19	48547172	48604423
SULT4A1_chr22_43819509_43867513	1/1	c0001	855	383	90	70	164	18	39	copy fasta	SULT4A1	chr22	43819509	43867513
SULT4A1_chr22_43819509_43867513	0/0	c0002	855	1	1	0	0	0	0	copy fasta	SULT4A1	chr22	43819509	43867513
SULT4A1_chr22_43819509_43867513	0/0	c0003	855	1	1	0	0	0	0	copy fasta	SULT4A1	chr22	43819509	43867513
SULT4A1_chr22_43819509_43867513	0/0	c0004	855	1	0	0	0	0	1	copy fasta	SULT4A1	chr22	43819509	43867513
SULT6B1_chr2_37162820_37193670	1/1	c0001	912	168	60	42	46	9	9	copy fasta	SULT6B1	chr2	37162820	37193670
SULT6B1_chr2_37162820_37193670	0/0	c0002	912	160	12	25	103	2	18	copy fasta	SULT6B1	chr2	37162820	37193670
SULT6B1_chr2_37162820_37193670	0/0	c0003	912	5	4	1	0	0	0	copy fasta	SULT6B1	chr2	37162820	37193670
SULT6B1_chr2_37162820_37193670	0/0	c0004	912	3	1	0	0	1	1	copy fasta	SULT6B1	chr2	37162820	37193670
SULT6B1_chr2_37162820_37193670	0/0	c0005	912	2	0	0	0	1	1	copy fasta	SULT6B1	chr2	37162820	37193670
SULT6B1_chr2_37162820_37193670	0/0	c0006	912	2	0	0	2	0	0	copy fasta	SULT6B1	chr2	37162820	37193670
SULT6B1_chr2_37162820_37193670	0/0	c0007	912	2	0	0	0	1	1	copy fasta	SULT6B1	chr2	37162820	37193670
SULT6B1_chr2_37162820_37193670	0/0	c0008	912	2	2	0	0	0	0	copy fasta	SULT6B1	chr2	37162820	37193670
SULT6B1_chr2_37162820_37193670	0/0	c0009	912	2	0	2	0	0	0	copy fasta	SULT6B1	chr2	37162820	37193670
SULT6B1_chr2_37162820_37193670	0/0	c0010	912	1	0	0	1	0	0	copy fasta	SULT6B1	chr2	37162820	37193670
SULT6B1_chr2_37162820_37193670	0/0	c0011	912	1	1	0	0	0	0	copy fasta	SULT6B1	chr2	37162820	37193670
SULT6B1_chr2_37162820_37193670	0/0	c0012	912	1	0	1	0	0	0	copy fasta	SULT6B1	chr2	37162820	37193670
SULT6B1_chr2_37162820_37193670	0/0	c0013	912	1	1	0	0	0	0	copy fasta	SULT6B1	chr2	37162820	37193670
SULT6B1_chr2_37162820_37193670	0/0	c0014	912	1	1	0	0	0	0	copy fasta	SULT6B1	chr2	37162820	37193670
SULT6B1_chr2_37162820_37193670	0/0	c0015	912	1	0	1	0	0	0	copy fasta	SULT6B1	chr2	37162820	37193670
SULT6B1_chr2_37162820_37193670	0/0	c0016	912	1	1	0	0	0	0	copy fasta	SULT6B1	chr2	37162820	37193670
SULT6B1_chr2_37162820_37193670	0/0	c0017	912	1	1	0	0	0	0	copy fasta	SULT6B1	chr2	37162820	37193670
SUMF1_chr3_4356146_4472269	0/0	c0001	1125	274	79	44	117	8	26	copy fasta	SUMF1	chr3	4356146	4472269
SUMF1_chr3_4356146_4472269	1/1	c0002	1125	84	4	19	50	2	7	copy fasta	SUMF1	chr3	4356146	4472269
SUMF1_chr3_4356146_4472269	0/0	c0003	1125	15	7	3	0	4	1	copy fasta	SUMF1	chr3	4356146	4472269
SUMF1_chr3_4356146_4472269	0/0	c0004	1125	7	0	4	0	0	3	copy fasta	SUMF1	chr3	4356146	4472269
SUMF1_chr3_4356146_4472269	0/0	c0005	1125	5	5	0	0	0	0	copy fasta	SUMF1	chr3	4356146	4472269
SUMF1_chr3_4356146_4472269	0/0	c0006	1125	1	1	0	0	0	0	copy fasta	SUMF1	chr3	4356146	4472269
SUMF1_chr3_4356146_4472269	0/0	c0007	1125	1	1	0	0	0	0	copy fasta	SUMF1	chr3	4356146	4472269
SUMF1_chr3_4356146_4472269	0/0	c0008	1125	1	1	0	0	0	0	copy fasta	SUMF1	chr3	4356146	4472269
SUMF1_chr3_4356146_4472269	0/0	c0009	1125	1	0	0	1	0	0	copy fasta	SUMF1	chr3	4356146	4472269
SUMF1_chr3_4356146_4472269	0/0	c0010	1125	1	0	0	1	0	0	copy fasta	SUMF1	chr3	4356146	4472269
SUMF1_chr3_4356146_4472269	0/0	c0011	1125	1	0	0	0	0	1	copy fasta	SUMF1	chr3	4356146	4472269
SUMF1_chr3_4356146_4472269	0/0	c0012	1125	1	0	0	1	0	0	copy fasta	SUMF1	chr3	4356146	4472269
SUMF2_chr7_56059286_56085670	0/1	c0001	906	341	76	54	176	9	25	copy fasta	SUMF2	chr7	56059286	56085670
SUMF2_chr7_56059286_56085670	0/0	c0002	906	59	8	23	11	5	12	copy fasta	SUMF2	chr7	56059286	56085670
SUMF2_chr7_56059286_56085670	0/0	c0003	906	2	2	0	0	0	0	copy fasta	SUMF2	chr7	56059286	56085670
SUMF2_chr7_56059286_56085670	0/0	c0004	906	2	0	0	0	0	2	copy fasta	SUMF2	chr7	56059286	56085670
SUMF2_chr7_56059286_56085670	0/0	c0005	906	1	0	0	0	0	1	copy fasta	SUMF2	chr7	56059286	56085670
SUMF2_chr7_56059286_56085670	0/0	c0006	906	1	1	0	0	0	0	copy fasta	SUMF2	chr7	56059286	56085670
SUMF2_chr7_56059286_56085670	0/0	c0007	906	1	0	1	0	0	0	copy fasta	SUMF2	chr7	56059286	56085670
SUMF2_chr7_56059286_56085670	0/0	c0008	906	1	1	0	0	0	0	copy fasta	SUMF2	chr7	56059286	56085670
SUMF2_chr7_56059286_56085670	0/0	c0009	906	1	0	0	0	0	1	copy fasta	SUMF2	chr7	56059286	56085670
SUMF2_chr7_56059286_56085670	1/0	c0010	906	1	0	0	0	0	0	copy fasta	SUMF2	chr7	56059286	56085670
SUMF2_chr7_56059286_56085670	0/0	c0011	906	1	0	0	0	0	1	copy fasta	SUMF2	chr7	56059286	56085670
SUMF2_chr7_56059286_56085670	0/0	c0012	906	1	0	0	1	0	0	copy fasta	SUMF2	chr7	56059286	56085670
SUMO1_chr2_202201182_202243597	1/1	c0001	306	374	88	76	144	18	46	copy fasta	SUMO1	chr2	202201182	202243597
SUMO2_chr17_75160586_75187959	1/1	c0001	288	398	94	76	168	12	46	copy fasta	SUMO2	chr17	75160586	75187959
SUMO3_chr21_44800617_44823062	1/1	c0001	312	399	87	74	178	16	42	copy fasta	SUMO3	chr21	44800617	44823062
SUMO3_chr21_44800617_44823062	0/0	c0002	312	7	7	0	0	0	0	copy fasta	SUMO3	chr21	44800617	44823062