JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
B3GALT9_chr9_120788467_120806787	0/0	c0005	1110	2	2	0	0	0	0	copy fasta	B3GALT9	chr9	120788467	120806787
B3GALT9_chr9_120788467_120806787	0/0	c0006	1110	1	0	1	0	0	0	copy fasta	B3GALT9	chr9	120788467	120806787
B3GALT9_chr9_120788467_120806787	0/0	c0007	1110	1	1	0	0	0	0	copy fasta	B3GALT9	chr9	120788467	120806787
B3GALT9_chr9_120788467_120806787	0/0	c0008	1110	1	1	0	0	0	0	copy fasta	B3GALT9	chr9	120788467	120806787
B3GALT9_chr9_120788467_120806787	0/0	c0009	1110	1	0	1	0	0	0	copy fasta	B3GALT9	chr9	120788467	120806787
B3GAT1_chr11_134373508_134417242	1/1	c0001	1005	328	73	74	121	18	40	copy fasta	B3GAT1	chr11	134373508	134417242
B3GAT1_chr11_134373508_134417242	0/0	c0002	1005	17	15	2	0	0	0	copy fasta	B3GAT1	chr11	134373508	134417242
B3GAT1_chr11_134373508_134417242	0/0	c0003	1005	6	6	0	0	0	0	copy fasta	B3GAT1	chr11	134373508	134417242
B3GAT1_chr11_134373508_134417242	0/0	c0004	1005	1	0	0	1	0	0	copy fasta	B3GAT1	chr11	134373508	134417242
B3GAT2_chr6_70851679_70962060	0/0	c0001	972	186	55	30	79	4	18	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	1/1	c0002	972	128	30	24	49	4	19	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	c0003	972	1	1	0	0	0	0	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT2_chr6_70851679_70962060	0/0	c0004	972	1	0	0	0	0	1	copy fasta	B3GAT2	chr6	70851679	70962060
B3GAT3_chr11_62610296_62626986	1/1	c0001	1008	286	91	69	80	14	30	copy fasta	B3GAT3	chr11	62610296	62626986
B3GAT3_chr11_62610296_62626986	0/0	c0002	1008	1	0	1	0	0	0	copy fasta	B3GAT3	chr11	62610296	62626986
B3GAT3_chr11_62610296_62626986	0/0	c0003	1008	1	0	0	1	0	0	copy fasta	B3GAT3	chr11	62610296	62626986
B3GAT3_chr11_62610296_62626986	0/0	c0004	1008	1	1	0	0	0	0	copy fasta	B3GAT3	chr11	62610296	62626986
B3GAT3_chr11_62610296_62626986	0/0	c0005	1008	1	0	0	1	0	0	copy fasta	B3GAT3	chr11	62610296	62626986
B3GLCT_chr13_31194975_31337276	0/0	c0001	1497	139	21	33	65	5	15	copy fasta	B3GLCT	chr13	31194975	31337276
B3GLCT_chr13_31194975_31337276	0/1	c0002	1497	106	47	14	32	2	10	copy fasta	B3GLCT	chr13	31194975	31337276
B3GLCT_chr13_31194975_31337276	1/0	c0003	1497	8	7	0	0	0	0	copy fasta	B3GLCT	chr13	31194975	31337276
B3GLCT_chr13_31194975_31337276	0/0	c0004	1497	3	0	3	0	0	0	copy fasta	B3GLCT	chr13	31194975	31337276
B3GLCT_chr13_31194975_31337276	0/0	c0005	1497	3	1	1	0	0	1	copy fasta	B3GLCT	chr13	31194975	31337276
B3GLCT_chr13_31194975_31337276	0/0	c0006	1497	2	0	2	0	0	0	copy fasta	B3GLCT	chr13	31194975	31337276
B3GLCT_chr13_31194975_31337276	0/0	c0007	1497	1	1	0	0	0	0	copy fasta	B3GLCT	chr13	31194975	31337276
B3GLCT_chr13_31194975_31337276	0/0	c0008	1497	1	1	0	0	0	0	copy fasta	B3GLCT	chr13	31194975	31337276
B3GLCT_chr13_31194975_31337276	0/0	c0009	1497	1	1	0	0	0	0	copy fasta	B3GLCT	chr13	31194975	31337276
B3GLCT_chr13_31194975_31337276	0/0	c0010	1497	1	0	0	0	1	0	copy fasta	B3GLCT	chr13	31194975	31337276
B3GLCT_chr13_31194975_31337276	0/0	c0011	1497	1	0	1	0	0	0	copy fasta	B3GLCT	chr13	31194975	31337276
B3GLCT_chr13_31194975_31337276	0/0	c0012	1497	1	0	0	1	0	0	copy fasta	B3GLCT	chr13	31194975	31337276
B3GLCT_chr13_31194975_31337276	0/0	c0013	1497	1	1	0	0	0	0	copy fasta	B3GLCT	chr13	31194975	31337276
B3GNT2_chr2_62191115_62229731	1/1	c0001	1194	380	79	65	171	18	45	copy fasta	B3GNT2	chr2	62191115	62229731
B3GNT2_chr2_62191115_62229731	0/0	c0002	1194	8	7	1	0	0	0	copy fasta	B3GNT2	chr2	62191115	62229731
B3GNT2_chr2_62191115_62229731	0/0	c0003	1194	4	4	0	0	0	0	copy fasta	B3GNT2	chr2	62191115	62229731
B3GNT2_chr2_62191115_62229731	0/0	c0004	1194	2	2	0	0	0	0	copy fasta	B3GNT2	chr2	62191115	62229731
B3GNT2_chr2_62191115_62229731	0/0	c0005	1194	2	0	0	2	0	0	copy fasta	B3GNT2	chr2	62191115	62229731
B3GNT2_chr2_62191115_62229731	0/0	c0006	1194	2	0	2	0	0	0	copy fasta	B3GNT2	chr2	62191115	62229731
B3GNT2_chr2_62191115_62229731	0/0	c0007	1194	1	0	0	0	0	1	copy fasta	B3GNT2	chr2	62191115	62229731
B3GNT2_chr2_62191115_62229731	0/0	c0008	1194	1	0	0	1	0	0	copy fasta	B3GNT2	chr2	62191115	62229731
B3GNT2_chr2_62191115_62229731	0/0	c0009	1194	1	1	0	0	0	0	copy fasta	B3GNT2	chr2	62191115	62229731
B3GNT2_chr2_62191115_62229731	0/0	c0010	1194	1	0	1	0	0	0	copy fasta	B3GNT2	chr2	62191115	62229731
B3GNT2_chr2_62191115_62229731	0/0	c0011	1194	1	0	1	0	0	0	copy fasta	B3GNT2	chr2	62191115	62229731
B3GNT2_chr2_62191115_62229731	0/0	c0012	1194	1	1	0	0	0	0	copy fasta	B3GNT2	chr2	62191115	62229731
B3GNT2_chr2_62191115_62229731	0/0	c0013	1194	1	1	0	0	0	0	copy fasta	B3GNT2	chr2	62191115	62229731
B3GNT2_chr2_62191115_62229731	0/0	c0014	1194	1	1	0	0	0	0	copy fasta	B3GNT2	chr2	62191115	62229731
B3GNT3_chr19_17790138_17818576	0/1	c0001	1119	227	66	48	61	14	37	copy fasta	B3GNT3	chr19	17790138	17818576
B3GNT3_chr19_17790138_17818576	1/0	c0002	1119	96	9	17	57	1	11	copy fasta	B3GNT3	chr19	17790138	17818576
B3GNT3_chr19_17790138_17818576	0/0	c0003	1119	63	15	9	36	1	2	copy fasta	B3GNT3	chr19	17790138	17818576
B3GNT3_chr19_17790138_17818576	0/0	c0004	1119	7	2	3	0	2	0	copy fasta	B3GNT3	chr19	17790138	17818576
B3GNT3_chr19_17790138_17818576	0/0	c0005	1119	5	5	0	0	0	0	copy fasta	B3GNT3	chr19	17790138	17818576