JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SUMO4_chr6_149395262_149406278	0/1	c0001	288	274	71	47	121	8	26	copy fasta	SUMO4	chr6	149395262	149406278
SUMO4_chr6_149395262_149406278	1/0	c0002	288	134	21	30	54	6	22	copy fasta	SUMO4	chr6	149395262	149406278
SUMO4_chr6_149395262_149406278	0/0	c0003	288	7	6	1	0	0	0	copy fasta	SUMO4	chr6	149395262	149406278
SUMO4_chr6_149395262_149406278	0/0	c0004	288	2	2	0	0	0	0	copy fasta	SUMO4	chr6	149395262	149406278
SUMO4_chr6_149395262_149406278	0/0	c0005	288	1	0	0	1	0	0	copy fasta	SUMO4	chr6	149395262	149406278
SUN1_chr7_827476_879934	0/0	c0001	2358	141	34	32	53	5	17	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/1	c0002	2358	94	22	17	48	2	4	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	c0003	2358	61	7	13	27	3	11	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	c0004	2358	33	0	0	32	0	1	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	1/0	c0005	2358	29	3	7	2	4	12	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	c0006	2358	13	12	1	0	0	0	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	c0007	2358	10	0	0	10	0	0	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	c0008	2358	6	5	1	0	0	0	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	c0009	2358	5	5	0	0	0	0	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	c0010	2358	2	0	0	2	0	0	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	c0011	2358	2	2	0	0	0	0	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	c0012	2358	2	1	1	0	0	0	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	c0013	2358	2	0	0	2	0	0	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	c0014	2358	1	0	0	1	0	0	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	c0015	2339	1	0	0	1	0	0	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	c0016	2358	1	0	0	1	0	0	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	c0017	2358	1	0	0	1	0	0	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	c0018	2358	1	1	0	0	0	0	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	c0019	2358	1	0	1	0	0	0	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	c0020	2358	1	1	0	0	0	0	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	c0021	2358	1	0	1	0	0	0	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	c0022	2358	1	0	1	0	0	0	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	c0023	2358	1	0	0	0	0	1	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	c0024	2358	1	1	0	0	0	0	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	c0025	2358	1	1	0	0	0	0	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	c0026	2358	1	0	0	1	0	0	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	c0027	2358	1	1	0	0	0	0	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	c0028	2358	1	1	0	0	0	0	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	c0029	2358	1	0	0	1	0	0	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	c0030	2358	1	0	1	0	0	0	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	c0031	2358	1	1	0	0	0	0	copy fasta	SUN1	chr7	827476	879934
SUN2_chr22_38729734_38760998	1/0	c0001	2154	159	32	49	44	8	25	copy fasta	SUN2	chr22	38729734	38760998
SUN2_chr22_38729734_38760998	0/1	c0002	2154	84	45	8	24	1	5	copy fasta	SUN2	chr22	38729734	38760998
SUN2_chr22_38729734_38760998	0/0	c0003	2154	29	0	1	20	1	7	copy fasta	SUN2	chr22	38729734	38760998
SUN2_chr22_38729734_38760998	0/0	c0004	2154	25	0	0	24	1	0	copy fasta	SUN2	chr22	38729734	38760998
SUN2_chr22_38729734_38760998	0/0	c0005	2154	16	0	0	15	0	1	copy fasta	SUN2	chr22	38729734	38760998
SUN2_chr22_38729734_38760998	0/0	c0006	2155	4	1	2	1	0	0	copy fasta	SUN2	chr22	38729734	38760998
SUN2_chr22_38729734_38760998	0/0	c0007	2154	4	4	0	0	0	0	copy fasta	SUN2	chr22	38729734	38760998
SUN2_chr22_38729734_38760998	0/0	c0008	2154	3	1	1	0	1	0	copy fasta	SUN2	chr22	38729734	38760998
SUN2_chr22_38729734_38760998	0/0	c0009	2154	3	3	0	0	0	0	copy fasta	SUN2	chr22	38729734	38760998
SUN2_chr22_38729734_38760998	0/0	c0010	2155	2	0	0	2	0	0	copy fasta	SUN2	chr22	38729734	38760998
SUN2_chr22_38729734_38760998	0/0	c0011	2155	2	0	0	2	0	0	copy fasta	SUN2	chr22	38729734	38760998
SUN2_chr22_38729734_38760998	0/0	c0012	2154	2	2	0	0	0	0	copy fasta	SUN2	chr22	38729734	38760998
SUN2_chr22_38729734_38760998	0/0	c0013	2154	2	0	0	2	0	0	copy fasta	SUN2	chr22	38729734	38760998
SUN2_chr22_38729734_38760998	0/0	c0014	2154	2	2	0	0	0	0	copy fasta	SUN2	chr22	38729734	38760998