JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SUN2_chr22_38729734_38760998	0/0	c0015	2154	1	1	0	0	0	0	copy fasta	SUN2	chr22	38729734	38760998
SUN2_chr22_38729734_38760998	0/0	c0016	2154	1	0	0	1	0	0	copy fasta	SUN2	chr22	38729734	38760998
SUN2_chr22_38729734_38760998	0/0	c0017	2155	1	0	0	1	0	0	copy fasta	SUN2	chr22	38729734	38760998
SUN2_chr22_38729734_38760998	0/0	c0018	2154	1	0	1	0	0	0	copy fasta	SUN2	chr22	38729734	38760998
SUN2_chr22_38729734_38760998	0/0	c0019	2154	1	1	0	0	0	0	copy fasta	SUN2	chr22	38729734	38760998
SUN2_chr22_38729734_38760998	0/0	c0020	2154	1	0	1	0	0	0	copy fasta	SUN2	chr22	38729734	38760998
SUN2_chr22_38729734_38760998	0/0	c0021	2154	1	0	0	1	0	0	copy fasta	SUN2	chr22	38729734	38760998
SUN2_chr22_38729734_38760998	0/0	c0022	2154	1	0	0	0	0	1	copy fasta	SUN2	chr22	38729734	38760998
SUN2_chr22_38729734_38760998	0/0	c0023	2154	1	0	0	1	0	0	copy fasta	SUN2	chr22	38729734	38760998
SUN2_chr22_38729734_38760998	0/0	c0024	2154	1	0	0	0	0	1	copy fasta	SUN2	chr22	38729734	38760998
SUN2_chr22_38729734_38760998	0/0	c0025	2154	1	0	0	1	0	0	copy fasta	SUN2	chr22	38729734	38760998
SUN2_chr22_38729734_38760998	0/0	c0026	2154	1	0	1	0	0	0	copy fasta	SUN2	chr22	38729734	38760998
SUN2_chr22_38729734_38760998	0/0	c0027	2155	1	0	0	1	0	0	copy fasta	SUN2	chr22	38729734	38760998
SUN3_chr7_47982148_48034107	1/1	c0001	1074	404	93	69	193	14	33	copy fasta	SUN3	chr7	47982148	48034107
SUN3_chr7_47982148_48034107	0/0	c0002	1074	2	2	0	0	0	0	copy fasta	SUN3	chr7	47982148	48034107
SUN3_chr7_47982148_48034107	0/0	c0003	1074	2	0	0	2	0	0	copy fasta	SUN3	chr7	47982148	48034107
SUN3_chr7_47982148_48034107	0/0	c0004	1074	1	1	0	0	0	0	copy fasta	SUN3	chr7	47982148	48034107
SUN3_chr7_47982148_48034107	0/0	c0005	1074	1	0	0	1	0	0	copy fasta	SUN3	chr7	47982148	48034107
SUN3_chr7_47982148_48034107	0/0	c0006	1074	1	1	0	0	0	0	copy fasta	SUN3	chr7	47982148	48034107
SUN3_chr7_47982148_48034107	0/0	c0007	1074	1	0	0	0	0	1	copy fasta	SUN3	chr7	47982148	48034107
SUN3_chr7_47982148_48034107	0/0	c0008	1074	1	0	1	0	0	0	copy fasta	SUN3	chr7	47982148	48034107
SUN3_chr7_47982148_48034107	0/0	c0009	1074	1	1	0	0	0	0	copy fasta	SUN3	chr7	47982148	48034107
SUN5_chr20_32978775_33009433	1/1	c0001	1140	327	71	62	154	7	31	copy fasta	SUN5	chr20	32978775	33009433
SUN5_chr20_32978775_33009433	0/0	c0002	1140	37	8	15	5	7	2	copy fasta	SUN5	chr20	32978775	33009433
SUN5_chr20_32978775_33009433	0/0	c0003	1140	12	9	3	0	0	0	copy fasta	SUN5	chr20	32978775	33009433
SUN5_chr20_32978775_33009433	0/0	c0004	1140	3	3	0	0	0	0	copy fasta	SUN5	chr20	32978775	33009433
SUN5_chr20_32978775_33009433	0/0	c0005	1140	2	0	0	1	0	1	copy fasta	SUN5	chr20	32978775	33009433
SUN5_chr20_32978775_33009433	0/0	c0006	1140	1	1	0	0	0	0	copy fasta	SUN5	chr20	32978775	33009433
SUOX_chr12_55992276_56010525	0/1	c0001	1638	318	24	72	173	16	32	copy fasta	SUOX	chr12	55992276	56010525
SUOX_chr12_55992276_56010525	1/0	c0002	1638	83	71	7	0	2	2	copy fasta	SUOX	chr12	55992276	56010525
SUOX_chr12_55992276_56010525	0/0	c0003	1638	9	0	0	9	0	0	copy fasta	SUOX	chr12	55992276	56010525
SUOX_chr12_55992276_56010525	0/0	c0004	1638	3	0	0	3	0	0	copy fasta	SUOX	chr12	55992276	56010525
SUOX_chr12_55992276_56010525	0/0	c0005	1638	2	0	0	2	0	0	copy fasta	SUOX	chr12	55992276	56010525
SUOX_chr12_55992276_56010525	0/0	c0006	1638	1	1	0	0	0	0	copy fasta	SUOX	chr12	55992276	56010525
SUOX_chr12_55992276_56010525	0/0	c0007	1638	1	0	0	1	0	0	copy fasta	SUOX	chr12	55992276	56010525
SUOX_chr12_55992276_56010525	0/0	c0008	1638	1	0	0	1	0	0	copy fasta	SUOX	chr12	55992276	56010525
SUOX_chr12_55992276_56010525	0/0	c0009	1638	1	0	1	0	0	0	copy fasta	SUOX	chr12	55992276	56010525
SUOX_chr12_55992276_56010525	0/0	c0010	1638	1	1	0	0	0	0	copy fasta	SUOX	chr12	55992276	56010525
SUOX_chr12_55992276_56010525	0/0	c0011	1638	1	1	0	0	0	0	copy fasta	SUOX	chr12	55992276	56010525
SUOX_chr12_55992276_56010525	0/0	c0012	1638	1	0	0	1	0	0	copy fasta	SUOX	chr12	55992276	56010525
SUPT16H_chr14_21346476_21389019	0/1	c0001	3144	205	42	35	105	12	10	copy fasta	SUPT16H	chr14	21346476	21389019
SUPT16H_chr14_21346476_21389019	1/0	c0002	3144	57	17	14	16	2	7	copy fasta	SUPT16H	chr14	21346476	21389019
SUPT16H_chr14_21346476_21389019	0/0	c0003	3144	11	11	0	0	0	0	copy fasta	SUPT16H	chr14	21346476	21389019
SUPT16H_chr14_21346476_21389019	0/0	c0004	3144	11	10	1	0	0	0	copy fasta	SUPT16H	chr14	21346476	21389019
SUPT16H_chr14_21346476_21389019	0/0	c0005	3144	9	8	1	0	0	0	copy fasta	SUPT16H	chr14	21346476	21389019
SUPT16H_chr14_21346476_21389019	0/0	c0006	3144	4	0	3	0	0	1	copy fasta	SUPT16H	chr14	21346476	21389019
SUPT16H_chr14_21346476_21389019	0/0	c0007	3144	2	2	0	0	0	0	copy fasta	SUPT16H	chr14	21346476	21389019
SUPT16H_chr14_21346476_21389019	0/0	c0008	3144	2	2	0	0	0	0	copy fasta	SUPT16H	chr14	21346476	21389019
SUPT16H_chr14_21346476_21389019	0/0	c0009	3144	2	0	0	2	0	0	copy fasta	SUPT16H	chr14	21346476	21389019
SUPT16H_chr14_21346476_21389019	0/0	c0010	3144	2	2	0	0	0	0	copy fasta	SUPT16H	chr14	21346476	21389019