JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SUPT20HL1_chrX_24355639_24372839	0/0	c0048	2670	1	0	0	1	0	0	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	c0049	2664	1	0	1	0	0	0	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	c0050	2676	1	1	0	0	0	0	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	c0051	2665	1	0	0	1	0	0	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL2_chrX_24303210_24319069	1/1	c0001	2454	232	45	38	123	7	17	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	c0002	2454	16	1	2	6	0	7	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	c0003	2454	13	13	0	0	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	c0004	2460	6	6	0	0	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	c0005	2448	5	3	1	1	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	c0006	2454	4	0	4	0	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	c0007	2454	2	1	1	0	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	c0008	2454	2	0	0	0	2	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	c0009	2466	2	2	0	0	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	c0010	2454	1	1	0	0	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	c0011	2454	1	0	1	0	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	c0012	2454	1	0	0	1	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	c0013	2454	1	1	0	0	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	c0014	2475	1	0	0	1	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	c0015	2460	1	1	0	0	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	c0016	2454	1	0	0	1	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	c0017	2454	1	0	1	0	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	c0018	2454	1	0	1	0	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	c0019	2403	1	0	1	0	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	c0020	2454	1	0	0	0	0	1	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20H_chr13_37004312_37064688	1/1	c0001	2340	156	61	33	42	5	13	copy fasta	SUPT20H	chr13	37004312	37064688
SUPT20H_chr13_37004312_37064688	0/0	c0002	2340	110	8	24	61	2	15	copy fasta	SUPT20H	chr13	37004312	37064688
SUPT20H_chr13_37004312_37064688	0/0	c0003	2340	11	11	0	0	0	0	copy fasta	SUPT20H	chr13	37004312	37064688
SUPT20H_chr13_37004312_37064688	0/0	c0004	2340	6	4	2	0	0	0	copy fasta	SUPT20H	chr13	37004312	37064688
SUPT20H_chr13_37004312_37064688	0/0	c0005	2340	4	0	0	4	0	0	copy fasta	SUPT20H	chr13	37004312	37064688
SUPT20H_chr13_37004312_37064688	0/0	c0006	2340	2	2	0	0	0	0	copy fasta	SUPT20H	chr13	37004312	37064688
SUPT20H_chr13_37004312_37064688	0/0	c0007	2340	2	0	1	0	1	0	copy fasta	SUPT20H	chr13	37004312	37064688
SUPT20H_chr13_37004312_37064688	0/0	c0008	2340	2	0	2	0	0	0	copy fasta	SUPT20H	chr13	37004312	37064688
SUPT20H_chr13_37004312_37064688	0/0	c0009	2340	2	0	0	2	0	0	copy fasta	SUPT20H	chr13	37004312	37064688
SUPT20H_chr13_37004312_37064688	0/0	c0010	2340	1	0	0	1	0	0	copy fasta	SUPT20H	chr13	37004312	37064688
SUPT20H_chr13_37004312_37064688	0/0	c0011	2340	1	0	0	1	0	0	copy fasta	SUPT20H	chr13	37004312	37064688
SUPT20H_chr13_37004312_37064688	0/0	c0012	2340	1	0	1	0	0	0	copy fasta	SUPT20H	chr13	37004312	37064688
SUPT20H_chr13_37004312_37064688	0/0	c0013	2340	1	0	1	0	0	0	copy fasta	SUPT20H	chr13	37004312	37064688
SUPT20H_chr13_37004312_37064688	0/0	c0014	2340	1	1	0	0	0	0	copy fasta	SUPT20H	chr13	37004312	37064688
SUPT20H_chr13_37004312_37064688	0/0	c0015	2340	1	0	0	1	0	0	copy fasta	SUPT20H	chr13	37004312	37064688
SUPT20H_chr13_37004312_37064688	0/0	c0016	2340	1	1	0	0	0	0	copy fasta	SUPT20H	chr13	37004312	37064688
SUPT20H_chr13_37004312_37064688	0/0	c0017	2340	1	0	1	0	0	0	copy fasta	SUPT20H	chr13	37004312	37064688
SUPT20H_chr13_37004312_37064688	0/0	c0018	2340	1	0	1	0	0	0	copy fasta	SUPT20H	chr13	37004312	37064688
SUPT3H_chr6_44821726_45382934	0/0	c0001	954	197	74	40	55	4	24	copy fasta	SUPT3H	chr6	44821726	45382934
SUPT3H_chr6_44821726_45382934	0/0	c0002	954	60	1	14	41	2	2	copy fasta	SUPT3H	chr6	44821726	45382934
SUPT3H_chr6_44821726_45382934	0/0	c0003	954	2	2	0	0	0	0	copy fasta	SUPT3H	chr6	44821726	45382934
SUPT3H_chr6_44821726_45382934	0/0	c0004	954	1	1	0	0	0	0	copy fasta	SUPT3H	chr6	44821726	45382934
SUPT3H_chr6_44821726_45382934	0/0	c0005	954	1	1	0	0	0	0	copy fasta	SUPT3H	chr6	44821726	45382934
SUPT3H_chr6_44821726_45382934	0/0	c0006	954	1	1	0	0	0	0	copy fasta	SUPT3H	chr6	44821726	45382934
SUPT4H1_chr17_58340178_58357201	1/1	c0001	354	436	100	84	190	16	44	copy fasta	SUPT4H1	chr17	58340178	58357201
SUPT4H1_chr17_58340178_58357201	0/0	c0002	354	2	0	0	2	0	0	copy fasta	SUPT4H1	chr17	58340178	58357201