JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SUPT5H_chr19_39440582_39481670	0/0	c0001	3264	170	50	26	71	4	19	copy fasta	SUPT5H	chr19	39440582	39481670
SUPT5H_chr19_39440582_39481670	1/1	c0002	3264	115	19	19	54	4	17	copy fasta	SUPT5H	chr19	39440582	39481670
SUPT5H_chr19_39440582_39481670	0/0	c0003	3264	55	18	12	20	3	2	copy fasta	SUPT5H	chr19	39440582	39481670
SUPT5H_chr19_39440582_39481670	0/0	c0004	3264	18	0	3	14	1	0	copy fasta	SUPT5H	chr19	39440582	39481670
SUPT5H_chr19_39440582_39481670	0/0	c0005	3264	3	0	0	0	3	0	copy fasta	SUPT5H	chr19	39440582	39481670
SUPT5H_chr19_39440582_39481670	0/0	c0006	3264	3	0	0	0	0	3	copy fasta	SUPT5H	chr19	39440582	39481670
SUPT5H_chr19_39440582_39481670	0/0	c0007	3264	2	2	0	0	0	0	copy fasta	SUPT5H	chr19	39440582	39481670
SUPT5H_chr19_39440582_39481670	0/0	c0008	3264	2	0	0	2	0	0	copy fasta	SUPT5H	chr19	39440582	39481670
SUPT5H_chr19_39440582_39481670	0/0	c0009	3264	1	0	0	1	0	0	copy fasta	SUPT5H	chr19	39440582	39481670
SUPT5H_chr19_39440582_39481670	0/0	c0010	3264	1	0	0	0	0	1	copy fasta	SUPT5H	chr19	39440582	39481670
SUPT5H_chr19_39440582_39481670	0/0	c0011	3264	1	0	0	1	0	0	copy fasta	SUPT5H	chr19	39440582	39481670
SUPT5H_chr19_39440582_39481670	0/0	c0012	3264	1	0	0	1	0	0	copy fasta	SUPT5H	chr19	39440582	39481670
SUPT5H_chr19_39440582_39481670	0/0	c0013	3264	1	0	0	1	0	0	copy fasta	SUPT5H	chr19	39440582	39481670
SUPT5H_chr19_39440582_39481670	0/0	c0014	3264	1	0	0	1	0	0	copy fasta	SUPT5H	chr19	39440582	39481670
SUPT5H_chr19_39440582_39481670	0/0	c0015	3264	1	0	0	1	0	0	copy fasta	SUPT5H	chr19	39440582	39481670
SUPT5H_chr19_39440582_39481670	0/0	c0016	3264	1	1	0	0	0	0	copy fasta	SUPT5H	chr19	39440582	39481670
SUPT5H_chr19_39440582_39481670	0/0	c0017	3264	1	0	0	1	0	0	copy fasta	SUPT5H	chr19	39440582	39481670
SUPT5H_chr19_39440582_39481670	0/0	c0018	3264	1	0	0	0	1	0	copy fasta	SUPT5H	chr19	39440582	39481670
SUPT6H_chr17_28657205_28707679	1/1	c0001	5181	116	50	22	27	4	11	copy fasta	SUPT6H	chr17	28657205	28707679
SUPT6H_chr17_28657205_28707679	0/0	c0002	5181	61	3	17	32	1	8	copy fasta	SUPT6H	chr17	28657205	28707679
SUPT6H_chr17_28657205_28707679	0/0	c0003	5181	43	13	6	19	1	4	copy fasta	SUPT6H	chr17	28657205	28707679
SUPT6H_chr17_28657205_28707679	0/0	c0004	5181	5	4	1	0	0	0	copy fasta	SUPT6H	chr17	28657205	28707679
SUPT6H_chr17_28657205_28707679	0/0	c0005	5181	1	1	0	0	0	0	copy fasta	SUPT6H	chr17	28657205	28707679
SUPT6H_chr17_28657205_28707679	0/0	c0006	5181	1	1	0	0	0	0	copy fasta	SUPT6H	chr17	28657205	28707679
SUPT6H_chr17_28657205_28707679	0/0	c0007	5181	1	1	0	0	0	0	copy fasta	SUPT6H	chr17	28657205	28707679
SUPT6H_chr17_28657205_28707679	0/0	c0008	5181	1	0	1	0	0	0	copy fasta	SUPT6H	chr17	28657205	28707679
SUPT6H_chr17_28657205_28707679	0/0	c0009	5181	1	1	0	0	0	0	copy fasta	SUPT6H	chr17	28657205	28707679
SUPT6H_chr17_28657205_28707679	0/0	c0010	5181	1	0	0	0	0	1	copy fasta	SUPT6H	chr17	28657205	28707679
SUPT6H_chr17_28657205_28707679	0/0	c0011	5181	1	0	0	1	0	0	copy fasta	SUPT6H	chr17	28657205	28707679
SUPT6H_chr17_28657205_28707679	0/0	c0012	5181	1	0	0	1	0	0	copy fasta	SUPT6H	chr17	28657205	28707679
SUPT6H_chr17_28657205_28707679	0/0	c0013	5181	1	0	1	0	0	0	copy fasta	SUPT6H	chr17	28657205	28707679
SUPT6H_chr17_28657205_28707679	0/0	c0014	5181	1	0	0	1	0	0	copy fasta	SUPT6H	chr17	28657205	28707679
SUPT6H_chr17_28657205_28707679	0/0	c0015	5181	1	0	0	1	0	0	copy fasta	SUPT6H	chr17	28657205	28707679
SUPT7L_chr2_27645809_27668614	1/1	c0001	1245	345	69	61	160	16	37	copy fasta	SUPT7L	chr2	27645809	27668614
SUPT7L_chr2_27645809_27668614	0/0	c0002	1245	17	12	4	0	0	1	copy fasta	SUPT7L	chr2	27645809	27668614
SUPT7L_chr2_27645809_27668614	0/0	c0003	1245	1	1	0	0	0	0	copy fasta	SUPT7L	chr2	27645809	27668614
SUPT7L_chr2_27645809_27668614	0/0	c0004	1245	1	0	0	1	0	0	copy fasta	SUPT7L	chr2	27645809	27668614
SUPT7L_chr2_27645809_27668614	0/0	c0005	1245	1	0	0	1	0	0	copy fasta	SUPT7L	chr2	27645809	27668614
SUPT7L_chr2_27645809_27668614	0/0	c0006	1245	1	0	1	0	0	0	copy fasta	SUPT7L	chr2	27645809	27668614
SUPV3L1_chr10_69175234_69214093	1/1	c0001	2361	256	34	41	131	13	35	copy fasta	SUPV3L1	chr10	69175234	69214093
SUPV3L1_chr10_69175234_69214093	0/0	c0002	2361	60	32	3	23	0	2	copy fasta	SUPV3L1	chr10	69175234	69214093
SUPV3L1_chr10_69175234_69214093	0/0	c0003	2361	11	11	0	0	0	0	copy fasta	SUPV3L1	chr10	69175234	69214093
SUPV3L1_chr10_69175234_69214093	0/0	c0004	2361	8	7	1	0	0	0	copy fasta	SUPV3L1	chr10	69175234	69214093
SUPV3L1_chr10_69175234_69214093	0/0	c0005	2361	4	4	0	0	0	0	copy fasta	SUPV3L1	chr10	69175234	69214093
SUPV3L1_chr10_69175234_69214093	0/0	c0006	2361	3	0	0	3	0	0	copy fasta	SUPV3L1	chr10	69175234	69214093
SUPV3L1_chr10_69175234_69214093	0/0	c0007	2361	3	0	1	0	2	0	copy fasta	SUPV3L1	chr10	69175234	69214093
SUPV3L1_chr10_69175234_69214093	0/0	c0008	2361	2	0	0	0	0	2	copy fasta	SUPV3L1	chr10	69175234	69214093
SUPV3L1_chr10_69175234_69214093	0/0	c0009	2361	2	2	0	0	0	0	copy fasta	SUPV3L1	chr10	69175234	69214093
SUPV3L1_chr10_69175234_69214093	0/0	c0010	2361	1	0	0	0	1	0	copy fasta	SUPV3L1	chr10	69175234	69214093
SUPV3L1_chr10_69175234_69214093	0/0	c0011	2361	1	1	0	0	0	0	copy fasta	SUPV3L1	chr10	69175234	69214093