JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SUPV3L1_chr10_69175234_69214093	0/0	c0012	2361	1	0	0	0	0	1	copy fasta	SUPV3L1	chr10	69175234	69214093
SUPV3L1_chr10_69175234_69214093	0/0	c0013	2361	1	1	0	0	0	0	copy fasta	SUPV3L1	chr10	69175234	69214093
SUPV3L1_chr10_69175234_69214093	0/0	c0014	2361	1	0	0	1	0	0	copy fasta	SUPV3L1	chr10	69175234	69214093
SURF1_chr9_133346758_133361487	1/1	c0001	903	343	85	73	122	17	44	copy fasta	SURF1	chr9	133346758	133361487
SURF1_chr9_133346758_133361487	0/0	c0002	903	56	1	0	54	0	1	copy fasta	SURF1	chr9	133346758	133361487
SURF1_chr9_133346758_133361487	0/0	c0003	903	25	0	0	25	0	0	copy fasta	SURF1	chr9	133346758	133361487
SURF1_chr9_133346758_133361487	0/0	c0004	903	11	5	4	0	1	1	copy fasta	SURF1	chr9	133346758	133361487
SURF1_chr9_133346758_133361487	0/0	c0005	903	3	2	1	0	0	0	copy fasta	SURF1	chr9	133346758	133361487
SURF1_chr9_133346758_133361487	0/0	c0006	903	2	2	0	0	0	0	copy fasta	SURF1	chr9	133346758	133361487
SURF1_chr9_133346758_133361487	0/0	c0007	903	2	2	0	0	0	0	copy fasta	SURF1	chr9	133346758	133361487
SURF1_chr9_133346758_133361487	0/0	c0008	903	1	1	0	0	0	0	copy fasta	SURF1	chr9	133346758	133361487
SURF1_chr9_133346758_133361487	0/0	c0009	903	1	0	0	1	0	0	copy fasta	SURF1	chr9	133346758	133361487
SURF2_chr9_133351550_133366158	1/0	c0001	771	280	62	39	139	16	23	copy fasta	SURF2	chr9	133351550	133366158
SURF2_chr9_133351550_133366158	0/1	c0002	771	118	17	33	49	2	16	copy fasta	SURF2	chr9	133351550	133366158
SURF2_chr9_133351550_133366158	0/0	c0003	772	10	2	0	8	0	0	copy fasta	SURF2	chr9	133351550	133366158
SURF2_chr9_133351550_133366158	0/0	c0004	771	8	8	0	0	0	0	copy fasta	SURF2	chr9	133351550	133366158
SURF2_chr9_133351550_133366158	0/0	c0005	771	7	0	5	0	0	2	copy fasta	SURF2	chr9	133351550	133366158
SURF2_chr9_133351550_133366158	0/0	c0006	771	6	6	0	0	0	0	copy fasta	SURF2	chr9	133351550	133366158
SURF2_chr9_133351550_133366158	0/0	c0007	771	5	0	0	5	0	0	copy fasta	SURF2	chr9	133351550	133366158
SURF2_chr9_133351550_133366158	0/0	c0008	772	4	0	4	0	0	0	copy fasta	SURF2	chr9	133351550	133366158
SURF2_chr9_133351550_133366158	0/0	c0009	771	3	3	0	0	0	0	copy fasta	SURF2	chr9	133351550	133366158
SURF2_chr9_133351550_133366158	0/0	c0010	771	2	0	2	0	0	0	copy fasta	SURF2	chr9	133351550	133366158
SURF2_chr9_133351550_133366158	0/0	c0011	771	1	0	0	0	0	1	copy fasta	SURF2	chr9	133351550	133366158
SURF2_chr9_133351550_133366158	0/0	c0012	771	1	1	0	0	0	0	copy fasta	SURF2	chr9	133351550	133366158
SURF2_chr9_133351550_133366158	0/0	c0013	771	1	1	0	0	0	0	copy fasta	SURF2	chr9	133351550	133366158
SURF2_chr9_133351550_133366158	0/0	c0014	772	1	0	1	0	0	0	copy fasta	SURF2	chr9	133351550	133366158
SURF2_chr9_133351550_133366158	0/0	c0015	771	1	0	0	1	0	0	copy fasta	SURF2	chr9	133351550	133366158
SURF4_chr9_133356464_133381060	1/1	c0001	810	421	98	82	179	16	44	copy fasta	SURF4	chr9	133356464	133381060
SURF4_chr9_133356464_133381060	0/0	c0002	810	2	0	0	2	0	0	copy fasta	SURF4	chr9	133356464	133381060
SURF4_chr9_133356464_133381060	0/0	c0003	810	1	0	0	1	0	0	copy fasta	SURF4	chr9	133356464	133381060
SURF6_chr9_133323776_133341188	1/0	c0001	1086	271	75	44	118	16	17	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/1	c0002	1086	106	3	30	51	2	19	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	c0003	1086	7	6	1	0	0	0	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	c0004	1086	6	0	0	5	0	1	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	c0005	1086	5	5	0	0	0	0	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	c0006	1086	2	0	0	0	0	2	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	c0007	1086	2	2	0	0	0	0	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	c0008	1086	2	1	1	0	0	0	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	c0009	1086	2	2	0	0	0	0	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	c0010	1086	1	1	0	0	0	0	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	c0011	1086	1	1	0	0	0	0	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	c0012	1086	1	1	0	0	0	0	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	c0013	1086	1	1	0	0	0	0	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	c0014	1086	1	0	0	1	0	0	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	c0015	1086	1	0	0	1	0	0	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	c0016	1086	1	0	0	0	0	1	copy fasta	SURF6	chr9	133323776	133341188
SUSD1_chr9_112035783_112180297	1/1	c0001	2618	194	39	36	94	8	15	copy fasta	SUSD1	chr9	112035783	112180297
SUSD1_chr9_112035783_112180297	0/0	c0002	2618	41	8	11	12	2	8	copy fasta	SUSD1	chr9	112035783	112180297
SUSD1_chr9_112035783_112180297	0/0	c0003	2618	26	10	2	10	0	4	copy fasta	SUSD1	chr9	112035783	112180297
SUSD1_chr9_112035783_112180297	0/0	c0004	2618	19	0	4	9	1	5	copy fasta	SUSD1	chr9	112035783	112180297