JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SUSD1_chr9_112035783_112180297	0/0	c0005	2618	10	2	5	3	0	0	copy fasta	SUSD1	chr9	112035783	112180297
SUSD1_chr9_112035783_112180297	0/0	c0006	2618	9	9	0	0	0	0	copy fasta	SUSD1	chr9	112035783	112180297
SUSD1_chr9_112035783_112180297	0/0	c0007	2618	8	0	5	0	3	0	copy fasta	SUSD1	chr9	112035783	112180297
SUSD1_chr9_112035783_112180297	0/0	c0008	2618	6	3	2	1	0	0	copy fasta	SUSD1	chr9	112035783	112180297
SUSD1_chr9_112035783_112180297	0/0	c0009	2618	3	0	0	3	0	0	copy fasta	SUSD1	chr9	112035783	112180297
SUSD1_chr9_112035783_112180297	0/0	c0010	2618	3	3	0	0	0	0	copy fasta	SUSD1	chr9	112035783	112180297
SUSD1_chr9_112035783_112180297	0/0	c0011	2618	3	3	0	0	0	0	copy fasta	SUSD1	chr9	112035783	112180297
SUSD1_chr9_112035783_112180297	0/0	c0012	2618	2	0	0	2	0	0	copy fasta	SUSD1	chr9	112035783	112180297
SUSD1_chr9_112035783_112180297	0/0	c0013	2618	2	2	0	0	0	0	copy fasta	SUSD1	chr9	112035783	112180297
SUSD1_chr9_112035783_112180297	0/0	c0014	2630	1	1	0	0	0	0	copy fasta	SUSD1	chr9	112035783	112180297
SUSD1_chr9_112035783_112180297	0/0	c0015	2630	1	1	0	0	0	0	copy fasta	SUSD1	chr9	112035783	112180297
SUSD1_chr9_112035783_112180297	0/0	c0016	2618	1	1	0	0	0	0	copy fasta	SUSD1	chr9	112035783	112180297
SUSD1_chr9_112035783_112180297	0/0	c0017	2618	1	0	0	0	0	1	copy fasta	SUSD1	chr9	112035783	112180297
SUSD1_chr9_112035783_112180297	0/0	c0018	2618	1	0	0	1	0	0	copy fasta	SUSD1	chr9	112035783	112180297
SUSD1_chr9_112035783_112180297	0/0	c0019	2618	1	0	0	0	0	1	copy fasta	SUSD1	chr9	112035783	112180297
SUSD1_chr9_112035783_112180297	0/0	c0020	2618	1	0	0	0	0	1	copy fasta	SUSD1	chr9	112035783	112180297
SUSD1_chr9_112035783_112180297	0/0	c0021	2618	1	0	1	0	0	0	copy fasta	SUSD1	chr9	112035783	112180297
SUSD1_chr9_112035783_112180297	0/0	c0022	2618	1	0	0	0	0	1	copy fasta	SUSD1	chr9	112035783	112180297
SUSD1_chr9_112035783_112180297	0/0	c0023	2618	1	0	0	1	0	0	copy fasta	SUSD1	chr9	112035783	112180297
SUSD1_chr9_112035783_112180297	0/0	c0024	2618	1	0	0	1	0	0	copy fasta	SUSD1	chr9	112035783	112180297
SUSD1_chr9_112035783_112180297	0/0	c0025	2618	1	0	0	1	0	0	copy fasta	SUSD1	chr9	112035783	112180297
SUSD2_chr22_24176487_24194106	1/1	c0001	2469	325	56	47	163	18	39	copy fasta	SUSD2	chr22	24176487	24194106
SUSD2_chr22_24176487_24194106	0/0	c0002	2469	25	1	5	15	0	4	copy fasta	SUSD2	chr22	24176487	24194106
SUSD2_chr22_24176487_24194106	0/0	c0003	2469	10	5	5	0	0	0	copy fasta	SUSD2	chr22	24176487	24194106
SUSD2_chr22_24176487_24194106	0/0	c0004	2469	8	8	0	0	0	0	copy fasta	SUSD2	chr22	24176487	24194106
SUSD2_chr22_24176487_24194106	0/0	c0005	2469	5	4	1	0	0	0	copy fasta	SUSD2	chr22	24176487	24194106
SUSD2_chr22_24176487_24194106	0/0	c0006	2469	3	0	0	0	0	3	copy fasta	SUSD2	chr22	24176487	24194106
SUSD2_chr22_24176487_24194106	0/0	c0007	2469	3	0	0	3	0	0	copy fasta	SUSD2	chr22	24176487	24194106
SUSD2_chr22_24176487_24194106	0/0	c0008	2469	3	3	0	0	0	0	copy fasta	SUSD2	chr22	24176487	24194106
SUSD2_chr22_24176487_24194106	0/0	c0009	2469	3	0	0	3	0	0	copy fasta	SUSD2	chr22	24176487	24194106
SUSD2_chr22_24176487_24194106	0/0	c0010	2469	3	0	3	0	0	0	copy fasta	SUSD2	chr22	24176487	24194106
SUSD2_chr22_24176487_24194106	0/0	c0011	2469	3	0	3	0	0	0	copy fasta	SUSD2	chr22	24176487	24194106
SUSD2_chr22_24176487_24194106	0/0	c0012	2469	2	0	0	0	0	2	copy fasta	SUSD2	chr22	24176487	24194106
SUSD2_chr22_24176487_24194106	0/0	c0013	2469	2	0	2	0	0	0	copy fasta	SUSD2	chr22	24176487	24194106
SUSD2_chr22_24176487_24194106	0/0	c0014	2469	2	0	0	2	0	0	copy fasta	SUSD2	chr22	24176487	24194106
SUSD2_chr22_24176487_24194106	0/0	c0015	2469	2	0	2	0	0	0	copy fasta	SUSD2	chr22	24176487	24194106
SUSD2_chr22_24176487_24194106	0/0	c0016	2469	2	2	0	0	0	0	copy fasta	SUSD2	chr22	24176487	24194106
SUSD2_chr22_24176487_24194106	0/0	c0017	2469	2	2	0	0	0	0	copy fasta	SUSD2	chr22	24176487	24194106
SUSD2_chr22_24176487_24194106	0/0	c0018	2469	2	2	0	0	0	0	copy fasta	SUSD2	chr22	24176487	24194106
SUSD2_chr22_24176487_24194106	0/0	c0019	2469	1	0	0	1	0	0	copy fasta	SUSD2	chr22	24176487	24194106
SUSD2_chr22_24176487_24194106	0/0	c0020	2469	1	0	0	1	0	0	copy fasta	SUSD2	chr22	24176487	24194106
SUSD2_chr22_24176487_24194106	0/0	c0021	2469	1	0	0	1	0	0	copy fasta	SUSD2	chr22	24176487	24194106
SUSD2_chr22_24176487_24194106	0/0	c0022	2469	1	0	0	0	0	1	copy fasta	SUSD2	chr22	24176487	24194106
SUSD2_chr22_24176487_24194106	0/0	c0023	2469	1	0	1	0	0	0	copy fasta	SUSD2	chr22	24176487	24194106
SUSD2_chr22_24176487_24194106	0/0	c0024	2469	1	1	0	0	0	0	copy fasta	SUSD2	chr22	24176487	24194106
SUSD2_chr22_24176487_24194106	0/0	c0025	2469	1	0	0	1	0	0	copy fasta	SUSD2	chr22	24176487	24194106
SUSD2_chr22_24176487_24194106	0/0	c0026	2469	1	0	0	1	0	0	copy fasta	SUSD2	chr22	24176487	24194106
SUSD2_chr22_24176487_24194106	0/0	c0027	2469	1	0	0	1	0	0	copy fasta	SUSD2	chr22	24176487	24194106
SUSD2_chr22_24176487_24194106	0/0	c0028	2469	1	0	0	0	0	1	copy fasta	SUSD2	chr22	24176487	24194106
SUSD2_chr22_24176487_24194106	0/0	c0029	2469	1	1	0	0	0	0	copy fasta	SUSD2	chr22	24176487	24194106