JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SUSD2_chr22_24176487_24194106	0/0	c0030	2469	1	1	0	0	0	0	copy fasta	SUSD2	chr22	24176487	24194106
SUSD2_chr22_24176487_24194106	0/0	c0031	2469	1	1	0	0	0	0	copy fasta	SUSD2	chr22	24176487	24194106
SUSD2_chr22_24176487_24194106	0/0	c0032	2469	1	0	0	1	0	0	copy fasta	SUSD2	chr22	24176487	24194106
SUSD2_chr22_24176487_24194106	0/0	c0033	2469	1	0	0	1	0	0	copy fasta	SUSD2	chr22	24176487	24194106
SUSD2_chr22_24176487_24194106	0/0	c0034	2469	1	0	1	0	0	0	copy fasta	SUSD2	chr22	24176487	24194106
SUSD2_chr22_24176487_24194106	0/0	c0035	2469	1	1	0	0	0	0	copy fasta	SUSD2	chr22	24176487	24194106
SUSD3_chr9_93053701_93090133	1/1	c0001	768	228	57	37	97	10	25	copy fasta	SUSD3	chr9	93053701	93090133
SUSD3_chr9_93053701_93090133	0/0	c0002	768	83	22	8	40	0	13	copy fasta	SUSD3	chr9	93053701	93090133
SUSD3_chr9_93053701_93090133	0/0	c0003	768	15	9	1	2	0	3	copy fasta	SUSD3	chr9	93053701	93090133
SUSD3_chr9_93053701_93090133	0/0	c0004	768	8	2	2	4	0	0	copy fasta	SUSD3	chr9	93053701	93090133
SUSD3_chr9_93053701_93090133	0/0	c0005	768	3	3	0	0	0	0	copy fasta	SUSD3	chr9	93053701	93090133
SUSD3_chr9_93053701_93090133	0/0	c0006	768	1	0	0	0	0	1	copy fasta	SUSD3	chr9	93053701	93090133
SUSD3_chr9_93053701_93090133	0/0	c0007	768	1	1	0	0	0	0	copy fasta	SUSD3	chr9	93053701	93090133
SUSD3_chr9_93053701_93090133	0/0	c0008	768	1	0	0	1	0	0	copy fasta	SUSD3	chr9	93053701	93090133
SUSD4_chr1_223215831_223369176	1/1	c0001	1473	226	55	44	88	9	28	copy fasta	SUSD4	chr1	223215831	223369176
SUSD4_chr1_223215831_223369176	0/0	c0002	1470	9	0	0	6	0	3	copy fasta	SUSD4	chr1	223215831	223369176
SUSD4_chr1_223215831_223369176	0/0	c0003	1473	9	0	0	9	0	0	copy fasta	SUSD4	chr1	223215831	223369176
SUSD4_chr1_223215831_223369176	0/0	c0004	1476	9	7	1	1	0	0	copy fasta	SUSD4	chr1	223215831	223369176
SUSD4_chr1_223215831_223369176	0/0	c0005	1470	5	0	0	5	0	0	copy fasta	SUSD4	chr1	223215831	223369176
SUSD4_chr1_223215831_223369176	0/0	c0006	1473	5	4	0	0	1	0	copy fasta	SUSD4	chr1	223215831	223369176
SUSD4_chr1_223215831_223369176	0/0	c0007	1473	2	1	0	0	0	1	copy fasta	SUSD4	chr1	223215831	223369176
SUSD4_chr1_223215831_223369176	0/0	c0008	1473	2	2	0	0	0	0	copy fasta	SUSD4	chr1	223215831	223369176
SUSD4_chr1_223215831_223369176	0/0	c0009	1473	2	2	0	0	0	0	copy fasta	SUSD4	chr1	223215831	223369176
SUSD4_chr1_223215831_223369176	0/0	c0010	1470	1	0	0	1	0	0	copy fasta	SUSD4	chr1	223215831	223369176
SUSD4_chr1_223215831_223369176	0/0	c0011	1473	1	0	1	0	0	0	copy fasta	SUSD4	chr1	223215831	223369176
SUSD4_chr1_223215831_223369176	0/0	c0012	1473	1	0	0	1	0	0	copy fasta	SUSD4	chr1	223215831	223369176
SUSD4_chr1_223215831_223369176	0/0	c0013	1473	1	0	0	1	0	0	copy fasta	SUSD4	chr1	223215831	223369176
SUSD4_chr1_223215831_223369176	0/0	c0014	1473	1	0	0	0	0	1	copy fasta	SUSD4	chr1	223215831	223369176
SUSD4_chr1_223215831_223369176	0/0	c0015	1473	1	0	0	0	0	1	copy fasta	SUSD4	chr1	223215831	223369176
SUSD4_chr1_223215831_223369176	0/0	c0016	1476	1	1	0	0	0	0	copy fasta	SUSD4	chr1	223215831	223369176
SUSD5_chr3_33145043_33223810	0/0	c0001	1890	195	37	27	112	2	17	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	0/1	c0002	1890	85	4	19	43	4	14	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	0/0	c0003	1890	67	18	14	21	3	11	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	0/0	c0004	1890	17	16	1	0	0	0	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	1/0	c0005	1890	12	1	9	0	1	0	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	0/0	c0006	1890	5	5	0	0	0	0	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	0/0	c0007	1890	2	2	0	0	0	0	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	0/0	c0008	1890	2	1	1	0	0	0	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	0/0	c0009	1890	2	2	0	0	0	0	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	0/0	c0010	1890	2	0	0	2	0	0	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	0/0	c0011	1890	1	1	0	0	0	0	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	0/0	c0012	1890	1	1	0	0	0	0	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	0/0	c0013	1890	1	0	0	1	0	0	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	0/0	c0014	1890	1	1	0	0	0	0	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	0/0	c0015	1890	1	0	0	0	0	1	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	0/0	c0016	1890	1	0	1	0	0	0	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	0/0	c0017	1890	1	1	0	0	0	0	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	0/0	c0018	1890	1	1	0	0	0	0	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	0/0	c0019	1890	1	0	1	0	0	0	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	0/0	c0020	1890	1	1	0	0	0	0	copy fasta	SUSD5	chr3	33145043	33223810