JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SUSD5_chr3_33145043_33223810	0/0	c0021	1890	1	0	0	0	0	1	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	0/0	c0022	1890	1	1	0	0	0	0	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	0/0	c0023	1890	1	1	0	0	0	0	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	0/0	c0024	1890	1	0	0	1	0	0	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	0/0	c0025	1890	1	0	1	0	0	0	copy fasta	SUSD5	chr3	33145043	33223810
SUSD6_chr14_69606596_69720144	1/1	c0001	912	249	81	39	87	10	30	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	0/0	c0002	912	34	2	3	26	2	1	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	0/0	c0003	912	1	0	0	1	0	0	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	0/0	c0004	912	1	1	0	0	0	0	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	0/0	c0005	912	1	1	0	0	0	0	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	0/0	c0006	912	1	0	0	0	0	1	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	0/0	c0007	912	1	1	0	0	0	0	copy fasta	SUSD6	chr14	69606596	69720144
SUV39H1_chrX_48691734_48714016	1/1	c0001	1239	243	69	48	85	11	28	copy fasta	SUV39H1	chrX	48691734	48714016
SUV39H1_chrX_48691734_48714016	0/0	c0002	1239	3	0	0	3	0	0	copy fasta	SUV39H1	chrX	48691734	48714016
SUV39H1_chrX_48691734_48714016	0/0	c0003	1239	2	2	0	0	0	0	copy fasta	SUV39H1	chrX	48691734	48714016
SUV39H1_chrX_48691734_48714016	0/0	c0004	1239	1	1	0	0	0	0	copy fasta	SUV39H1	chrX	48691734	48714016
SUV39H1_chrX_48691734_48714016	0/0	c0005	1239	1	0	0	1	0	0	copy fasta	SUV39H1	chrX	48691734	48714016
SUV39H1_chrX_48691734_48714016	0/0	c0006	1239	1	0	0	1	0	0	copy fasta	SUV39H1	chrX	48691734	48714016
SUV39H1_chrX_48691734_48714016	0/0	c0007	1243	1	0	0	1	0	0	copy fasta	SUV39H1	chrX	48691734	48714016
SUV39H2_chr10_14873866_14909315	1/1	c0001	1233	378	79	52	195	12	38	copy fasta	SUV39H2	chr10	14873866	14909315
SUV39H2_chr10_14873866_14909315	0/0	c0002	1233	24	3	13	1	1	6	copy fasta	SUV39H2	chr10	14873866	14909315
SUV39H2_chr10_14873866_14909315	0/0	c0003	1233	17	10	5	1	1	0	copy fasta	SUV39H2	chr10	14873866	14909315
SUV39H2_chr10_14873866_14909315	0/0	c0004	1233	1	0	0	1	0	0	copy fasta	SUV39H2	chr10	14873866	14909315
SUZ12_chr17_31932007_32006038	1/1	c0001	2220	270	71	57	94	12	34	copy fasta	SUZ12	chr17	31932007	32006038
SUZ12_chr17_31932007_32006038	0/0	c0002	2220	4	4	0	0	0	0	copy fasta	SUZ12	chr17	31932007	32006038
SUZ12_chr17_31932007_32006038	0/0	c0003	2220	3	3	0	0	0	0	copy fasta	SUZ12	chr17	31932007	32006038
SUZ12_chr17_31932007_32006038	0/0	c0004	2220	1	1	0	0	0	0	copy fasta	SUZ12	chr17	31932007	32006038
SUZ12_chr17_31932007_32006038	0/0	c0005	2220	1	1	0	0	0	0	copy fasta	SUZ12	chr17	31932007	32006038
SUZ12_chr17_31932007_32006038	0/0	c0006	2220	1	0	1	0	0	0	copy fasta	SUZ12	chr17	31932007	32006038
SV2A_chr1_149898318_149922844	1/1	c0001	2229	333	73	63	141	15	39	copy fasta	SV2A	chr1	149898318	149922844
SV2A_chr1_149898318_149922844	0/0	c0002	2229	7	7	0	0	0	0	copy fasta	SV2A	chr1	149898318	149922844
SV2A_chr1_149898318_149922844	0/0	c0003	2229	7	7	0	0	0	0	copy fasta	SV2A	chr1	149898318	149922844
SV2A_chr1_149898318_149922844	0/0	c0004	2229	6	0	0	0	0	6	copy fasta	SV2A	chr1	149898318	149922844
SV2A_chr1_149898318_149922844	0/0	c0005	2229	3	3	0	0	0	0	copy fasta	SV2A	chr1	149898318	149922844
SV2A_chr1_149898318_149922844	0/0	c0006	2229	2	0	2	0	0	0	copy fasta	SV2A	chr1	149898318	149922844
SV2A_chr1_149898318_149922844	0/0	c0007	2229	1	0	1	0	0	0	copy fasta	SV2A	chr1	149898318	149922844
SV2A_chr1_149898318_149922844	0/0	c0008	2229	1	1	0	0	0	0	copy fasta	SV2A	chr1	149898318	149922844
SV2A_chr1_149898318_149922844	0/0	c0009	2229	1	0	0	0	0	1	copy fasta	SV2A	chr1	149898318	149922844
SV2A_chr1_149898318_149922844	0/0	c0010	2229	1	0	0	0	1	0	copy fasta	SV2A	chr1	149898318	149922844
SV2A_chr1_149898318_149922844	0/0	c0011	2229	1	0	0	1	0	0	copy fasta	SV2A	chr1	149898318	149922844
SV2A_chr1_149898318_149922844	0/0	c0012	2229	1	1	0	0	0	0	copy fasta	SV2A	chr1	149898318	149922844
SV2B_chr15_91095257_91307565	1/0	c0001	2052	92	18	25	22	6	20	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	c0002	2052	20	9	3	3	0	5	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	c0003	2052	17	16	1	0	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	c0004	2052	15	10	3	0	0	2	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	c0005	2052	14	5	1	5	0	3	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	c0006	2052	12	12	0	0	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	c0007	2052	9	5	4	0	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	c0008	2052	5	0	2	0	0	3	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	c0009	2052	5	5	0	0	0	0	copy fasta	SV2B	chr15	91095257	91307565