JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SV2B_chr15_91095257_91307565	0/0	c0010	2052	4	1	0	2	0	1	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	c0011	2052	3	0	1	0	1	1	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/1	c0012	2052	2	0	0	0	1	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	c0013	2052	2	2	0	0	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	c0014	2052	1	0	0	1	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	c0015	2052	1	0	0	1	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	c0016	2052	1	1	0	0	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	c0017	2052	1	0	1	0	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	c0018	2052	1	0	1	0	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	c0019	2052	1	1	0	0	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	c0020	2052	1	1	0	0	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	c0021	2052	1	0	0	1	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	c0022	2052	1	0	0	0	0	1	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	c0023	2052	1	0	0	0	0	1	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	c0024	2052	1	1	0	0	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	c0025	2052	1	1	0	0	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	c0026	2052	1	0	0	0	0	1	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	c0027	2052	1	0	0	1	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2C_chr5_76078383_76338956	1/0	c0001	2184	103	39	15	35	2	11	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	c0002	2184	57	15	15	13	4	10	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	c0003	2184	20	11	2	7	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	c0004	2184	19	10	4	5	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/1	c0005	2184	9	1	3	3	1	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	c0006	2184	7	1	1	5	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	c0007	2184	5	5	0	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	c0008	2184	4	4	0	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	c0009	2184	3	0	2	1	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	c0010	2184	2	0	2	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	c0011	2184	1	1	0	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	c0012	2184	1	0	0	0	1	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	c0013	2184	1	0	0	1	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	c0014	2184	1	0	0	0	0	1	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	c0015	2184	1	1	0	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SVBP_chr1_42802052_42822397	1/1	c0001	201	394	92	64	176	14	46	copy fasta	SVBP	chr1	42802052	42822397
SVEP1_chr9_110360248_110584741	0/0	c0001	10716	19	3	0	14	0	2	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0002	10716	15	2	3	8	2	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0003	10716	15	0	4	8	0	3	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0004	10716	14	0	1	10	2	1	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0005	10716	12	4	4	0	0	4	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0006	10716	8	0	0	8	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0007	10716	7	2	0	3	0	2	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0008	10716	6	0	1	3	1	1	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0009	10716	6	0	0	6	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0010	10716	6	0	1	5	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0011	10716	6	0	1	5	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0012	10716	6	0	0	6	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0013	10716	6	0	3	0	1	2	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0014	10716	6	4	2	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0015	10716	5	0	0	5	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0016	10716	5	0	2	2	0	1	copy fasta	SVEP1	chr9	110360248	110584741