JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
B3GNT3_chr19_17790138_17818576	0/0	c0006	1119	2	2	0	0	0	0	copy fasta	B3GNT3	chr19	17790138	17818576
B3GNT3_chr19_17790138_17818576	0/0	c0007	1119	1	1	0	0	0	0	copy fasta	B3GNT3	chr19	17790138	17818576
B3GNT3_chr19_17790138_17818576	0/0	c0008	1119	1	0	1	0	0	0	copy fasta	B3GNT3	chr19	17790138	17818576
B3GNT3_chr19_17790138_17818576	0/0	c0009	1119	1	0	0	1	0	0	copy fasta	B3GNT3	chr19	17790138	17818576
B3GNT3_chr19_17790138_17818576	0/0	c0010	1130	1	0	0	1	0	0	copy fasta	B3GNT3	chr19	17790138	17818576
B3GNT3_chr19_17790138_17818576	0/0	c0011	1119	1	0	0	1	0	0	copy fasta	B3GNT3	chr19	17790138	17818576
B3GNT3_chr19_17790138_17818576	0/0	c0012	1119	1	0	0	1	0	0	copy fasta	B3GNT3	chr19	17790138	17818576
B3GNT4_chr12_122198709_122213952	0/0	c0001	1137	183	35	18	108	2	20	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/1	c0002	1137	170	22	53	66	13	15	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	c0003	1137	23	11	1	9	0	2	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	c0004	1137	16	16	0	0	0	0	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	c0005	1137	5	4	0	1	0	0	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	1/0	c0006	1137	3	2	0	0	0	0	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	c0007	1137	2	2	0	0	0	0	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	c0008	1137	2	0	0	0	0	2	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	c0009	1137	1	0	0	1	0	0	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	c0010	1137	1	1	0	0	0	0	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	c0011	1137	1	1	0	0	0	0	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	c0012	1137	1	0	1	0	0	0	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	c0013	1137	1	0	0	0	0	1	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	c0014	1137	1	0	0	0	1	0	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	c0015	1137	1	0	0	1	0	0	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	c0016	1137	1	0	1	0	0	0	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT5_chr3_183248253_183278385	1/1	c0001	1137	385	94	73	170	14	32	copy fasta	B3GNT5	chr3	183248253	183278385
B3GNT5_chr3_183248253_183278385	0/0	c0002	1137	2	2	0	0	0	0	copy fasta	B3GNT5	chr3	183248253	183278385
B3GNT5_chr3_183248253_183278385	0/0	c0003	1137	1	0	0	1	0	0	copy fasta	B3GNT5	chr3	183248253	183278385
B3GNT5_chr3_183248253_183278385	0/0	c0004	1137	1	0	1	0	0	0	copy fasta	B3GNT5	chr3	183248253	183278385
B3GNT5_chr3_183248253_183278385	0/0	c0005	1137	1	0	0	1	0	0	copy fasta	B3GNT5	chr3	183248253	183278385
B3GNT6_chr11_77029398_77046973	0/0	c0001	1155	229	26	48	115	10	30	copy fasta	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	1/1	c0002	1155	109	32	21	38	8	8	copy fasta	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	c0003	1155	91	39	8	39	0	5	copy fasta	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	c0004	1155	3	0	3	0	0	0	copy fasta	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	c0005	1155	2	0	2	0	0	0	copy fasta	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	c0006	1155	2	2	0	0	0	0	copy fasta	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	c0007	1155	1	0	0	1	0	0	copy fasta	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	c0008	1155	1	1	0	0	0	0	copy fasta	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	c0009	1155	1	0	1	0	0	0	copy fasta	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	c0010	1155	1	0	1	0	0	0	copy fasta	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	c0011	1155	1	0	0	1	0	0	copy fasta	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	c0012	1155	1	0	0	0	0	1	copy fasta	B3GNT6	chr11	77029398	77046973
B3GNT7_chr2_231390710_231406164	1/1	c0001	1206	319	79	43	148	10	37	copy fasta	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	c0002	1206	95	14	22	44	5	10	copy fasta	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	c0003	1206	3	3	0	0	0	0	copy fasta	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	c0004	1206	2	2	0	0	0	0	copy fasta	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	c0005	1206	1	1	0	0	0	0	copy fasta	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	c0006	1206	1	0	0	0	0	1	copy fasta	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	c0007	1206	1	1	0	0	0	0	copy fasta	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	c0008	1206	1	0	1	0	0	0	copy fasta	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	c0009	1206	1	0	0	1	0	0	copy fasta	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	c0010	1206	1	0	0	1	0	0	copy fasta	B3GNT7	chr2	231390710	231406164