JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SVEP1_chr9_110360248_110584741	0/0	c0017	10716	4	0	1	2	0	1	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0018	10716	4	0	0	4	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0019	10716	4	3	1	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0020	10716	4	0	3	0	1	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0021	10716	3	0	1	1	0	1	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0022	10716	3	0	2	0	0	1	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0023	10716	3	1	0	2	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0024	10716	3	0	0	1	0	2	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0025	10716	3	2	0	1	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0026	10716	3	3	0	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0027	10716	3	0	0	3	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0028	10716	3	0	2	0	1	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0029	10716	3	0	0	3	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0030	10716	3	0	0	3	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0031	10716	3	3	0	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0032	10716	3	0	0	3	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0033	10716	3	3	0	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0034	10716	3	3	0	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0035	10716	3	0	2	0	0	1	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0036	10716	3	0	3	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0037	10716	2	0	0	2	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0038	10716	2	0	2	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0039	10716	2	0	0	1	0	1	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0040	10716	2	0	1	0	0	1	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0041	10716	2	0	0	0	0	2	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0042	10716	2	0	0	0	0	2	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0043	10716	2	0	0	0	0	2	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0044	10716	2	0	0	1	0	1	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0045	10716	2	0	0	2	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0046	10716	2	0	2	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0047	10716	2	2	0	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0048	10716	2	0	2	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0049	10716	2	1	1	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0050	10716	2	2	0	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0051	10716	2	0	0	2	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0052	10716	2	0	2	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0053	10716	2	2	0	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0054	10716	2	2	0	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0055	10716	2	2	0	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0056	10716	2	0	0	0	0	2	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0057	10716	2	0	1	0	1	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0058	10716	2	2	0	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0059	10716	2	0	0	0	2	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0060	10716	2	2	0	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0061	10716	2	2	0	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0062	10716	2	0	0	2	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0063	10700	1	0	0	1	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0064	10716	1	0	1	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0065	10716	1	0	0	0	0	1	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	c0066	10716	1	0	1	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741