JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SVIL_chr10_29452338_29639971	0/0	c0001	6645	24	2	4	16	0	2	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0002	6645	21	2	5	9	1	4	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0003	6645	11	0	9	0	1	1	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0004	6645	9	0	8	1	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0005	6645	9	5	3	1	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0006	6645	8	1	0	4	0	3	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0007	6645	8	0	0	7	1	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0008	6645	8	8	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0009	6645	7	0	5	0	0	2	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0010	6645	7	2	1	4	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0011	6645	6	0	0	6	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0012	6645	6	0	0	3	0	3	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0013	6645	5	0	0	5	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0014	6645	5	0	4	0	1	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0015	6645	4	1	1	1	0	1	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0016	6645	4	1	2	0	0	1	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0017	6645	3	1	2	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0018	6645	3	3	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0019	6645	3	3	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0020	6645	3	2	1	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0021	6645	3	2	1	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0022	6645	2	2	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0023	6645	2	1	0	1	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0024	6645	2	0	0	2	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0025	6645	2	0	1	0	0	1	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0026	6645	2	0	1	0	0	1	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0027	6645	2	2	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0028	6645	2	2	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0029	6645	2	2	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0030	6645	2	2	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0031	6645	2	0	0	0	0	2	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0032	6645	2	1	0	1	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0033	6645	2	0	0	2	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0034	6645	2	1	1	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0035	6645	2	1	0	0	0	1	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0036	6645	2	0	0	0	0	2	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0037	6645	2	2	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0038	6645	2	0	0	0	1	1	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0039	6645	2	2	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0040	6645	2	0	0	2	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0041	6645	2	1	1	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0042	6645	1	0	0	0	0	1	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0043	6645	1	1	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0044	6645	1	0	1	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0045	6645	1	0	0	1	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0046	6645	1	0	1	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0047	6645	1	0	1	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0048	6645	1	1	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0049	6645	1	0	0	1	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0050	6645	1	0	0	1	0	0	copy fasta	SVIL	chr10	29452338	29639971