JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SVIL_chr10_29452338_29639971	0/0	c0051	6645	1	0	1	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0052	6645	1	0	1	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0053	6645	1	0	1	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0054	6645	1	1	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0055	6645	1	0	1	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0056	6645	1	1	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0057	6645	1	1	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0058	6645	1	0	0	1	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0059	6645	1	0	0	1	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0060	6645	1	0	0	1	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0061	6645	1	1	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0062	6645	1	0	1	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0063	6645	1	1	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0064	6645	1	1	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0065	6645	1	1	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0066	6645	1	1	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0067	6645	1	0	1	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0068	6645	1	1	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0069	6645	1	1	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0070	6645	1	1	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0071	6645	1	1	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0072	6645	1	1	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0073	6645	1	1	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0074	6645	1	0	0	0	0	1	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0075	6645	1	0	0	0	0	1	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0076	6645	1	0	0	0	0	1	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0077	6645	1	0	0	0	0	1	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0078	6645	1	0	1	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0079	6645	1	0	1	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0080	6645	1	0	0	1	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0081	6645	1	0	0	1	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0082	6645	1	1	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0083	6645	1	0	0	1	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0084	6645	1	0	0	0	1	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0085	6645	1	0	0	0	0	1	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0086	6645	1	0	1	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0087	6645	1	1	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0088	6645	1	0	0	0	0	1	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0089	6645	1	0	0	0	1	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0090	6645	1	0	0	0	0	1	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0091	6645	1	0	0	0	0	1	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0092	6645	1	0	0	1	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0093	6645	1	0	0	1	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0094	6645	1	0	0	1	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0095	6645	1	0	0	0	0	1	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0096	6645	1	0	0	1	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0097	6645	1	0	0	1	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0098	6645	1	0	0	1	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0099	6645	1	0	0	0	0	1	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0100	6645	1	0	0	1	0	0	copy fasta	SVIL	chr10	29452338	29639971