JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SVIL_chr10_29452338_29639971	0/0	c0101	6645	1	1	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0102	6645	1	1	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0103	6645	1	0	0	0	0	1	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0104	6645	1	1	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0105	6645	1	1	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0106	6645	1	0	0	1	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0107	6645	1	0	0	1	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0108	6645	1	0	0	1	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0109	6645	1	0	0	1	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0110	6645	1	0	0	0	0	1	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0111	6645	1	1	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0112	6645	1	1	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0113	6645	1	1	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0114	6645	1	1	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0115	6645	1	0	0	1	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0116	6645	1	0	1	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0117	6645	1	0	0	1	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0118	6645	1	0	1	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0119	6645	1	1	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0120	6645	1	1	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0121	6645	1	1	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0122	6645	1	0	1	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	1/0	c0123	6645	1	0	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0124	6645	1	0	0	0	1	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0125	6645	1	1	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0126	6645	1	0	1	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0127	6645	1	0	0	0	0	1	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0128	6645	1	1	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/1	c0129	6645	1	0	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0130	6645	1	1	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0131	6645	1	1	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0132	6645	1	0	0	0	0	1	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0133	6645	1	0	0	1	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	c0134	6645	1	1	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIP_chr11_22813927_22834801	1/1	c0001	234	430	92	74	198	16	48	copy fasta	SVIP	chr11	22813927	22834801
SVOPL_chr7_138589285_138706362	0/0	c0001	1479	99	46	6	39	0	8	copy fasta	SVOPL	chr7	138589285	138706362
SVOPL_chr7_138589285_138706362	1/0	c0002	1479	43	4	9	16	1	12	copy fasta	SVOPL	chr7	138589285	138706362
SVOPL_chr7_138589285_138706362	0/0	c0003	1479	39	16	11	6	4	2	copy fasta	SVOPL	chr7	138589285	138706362
SVOPL_chr7_138589285_138706362	0/1	c0004	1479	33	3	10	5	7	7	copy fasta	SVOPL	chr7	138589285	138706362
SVOPL_chr7_138589285_138706362	0/0	c0005	1479	30	7	2	15	1	5	copy fasta	SVOPL	chr7	138589285	138706362
SVOPL_chr7_138589285_138706362	0/0	c0006	1479	20	4	7	8	0	1	copy fasta	SVOPL	chr7	138589285	138706362
SVOPL_chr7_138589285_138706362	0/0	c0007	1479	18	1	0	15	0	2	copy fasta	SVOPL	chr7	138589285	138706362
SVOPL_chr7_138589285_138706362	0/0	c0008	1479	15	0	1	9	2	3	copy fasta	SVOPL	chr7	138589285	138706362
SVOPL_chr7_138589285_138706362	0/0	c0009	1479	11	0	0	11	0	0	copy fasta	SVOPL	chr7	138589285	138706362
SVOPL_chr7_138589285_138706362	0/0	c0010	1479	11	0	2	5	3	1	copy fasta	SVOPL	chr7	138589285	138706362
SVOPL_chr7_138589285_138706362	0/0	c0011	1479	5	0	0	5	0	0	copy fasta	SVOPL	chr7	138589285	138706362
SVOPL_chr7_138589285_138706362	0/0	c0012	1479	4	0	1	3	0	0	copy fasta	SVOPL	chr7	138589285	138706362
SVOPL_chr7_138589285_138706362	0/0	c0013	1479	4	2	0	2	0	0	copy fasta	SVOPL	chr7	138589285	138706362
SVOPL_chr7_138589285_138706362	0/0	c0014	1479	3	3	0	0	0	0	copy fasta	SVOPL	chr7	138589285	138706362
SVOPL_chr7_138589285_138706362	0/0	c0015	1479	2	2	0	0	0	0	copy fasta	SVOPL	chr7	138589285	138706362