JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SVOPL_chr7_138589285_138706362	0/0	c0016	1479	2	0	0	2	0	0	copy fasta	SVOPL	chr7	138589285	138706362
SVOPL_chr7_138589285_138706362	0/0	c0017	1479	2	0	0	2	0	0	copy fasta	SVOPL	chr7	138589285	138706362
SVOPL_chr7_138589285_138706362	0/0	c0018	1479	2	0	0	2	0	0	copy fasta	SVOPL	chr7	138589285	138706362
SVOPL_chr7_138589285_138706362	0/0	c0019	1479	1	0	0	1	0	0	copy fasta	SVOPL	chr7	138589285	138706362
SVOPL_chr7_138589285_138706362	0/0	c0020	1479	1	1	0	0	0	0	copy fasta	SVOPL	chr7	138589285	138706362
SVOPL_chr7_138589285_138706362	0/0	c0021	1479	1	0	0	1	0	0	copy fasta	SVOPL	chr7	138589285	138706362
SVOPL_chr7_138589285_138706362	0/0	c0022	1476	1	0	0	1	0	0	copy fasta	SVOPL	chr7	138589285	138706362
SVOPL_chr7_138589285_138706362	0/0	c0023	1479	1	1	0	0	0	0	copy fasta	SVOPL	chr7	138589285	138706362
SVOPL_chr7_138589285_138706362	0/0	c0024	1476	1	0	0	1	0	0	copy fasta	SVOPL	chr7	138589285	138706362
SVOPL_chr7_138589285_138706362	0/0	c0025	1479	1	1	0	0	0	0	copy fasta	SVOPL	chr7	138589285	138706362
SVOPL_chr7_138589285_138706362	0/0	c0026	1479	1	0	0	1	0	0	copy fasta	SVOPL	chr7	138589285	138706362
SVOPL_chr7_138589285_138706362	0/0	c0027	1479	1	0	1	0	0	0	copy fasta	SVOPL	chr7	138589285	138706362
SVOPL_chr7_138589285_138706362	0/0	c0028	1479	1	0	0	1	0	0	copy fasta	SVOPL	chr7	138589285	138706362
SVOPL_chr7_138589285_138706362	0/0	c0029	1479	1	0	0	1	0	0	copy fasta	SVOPL	chr7	138589285	138706362
SVOPL_chr7_138589285_138706362	0/0	c0030	1476	1	0	0	1	0	0	copy fasta	SVOPL	chr7	138589285	138706362
SVOPL_chr7_138589285_138706362	0/0	c0031	1479	1	1	0	0	0	0	copy fasta	SVOPL	chr7	138589285	138706362
SVOPL_chr7_138589285_138706362	0/0	c0032	1479	1	0	0	1	0	0	copy fasta	SVOPL	chr7	138589285	138706362
SVOPL_chr7_138589285_138706362	0/0	c0033	1479	1	0	0	1	0	0	copy fasta	SVOPL	chr7	138589285	138706362
SVOPL_chr7_138589285_138706362	0/0	c0034	1479	1	0	0	1	0	0	copy fasta	SVOPL	chr7	138589285	138706362
SVOPL_chr7_138589285_138706362	0/0	c0035	1479	1	0	0	0	0	1	copy fasta	SVOPL	chr7	138589285	138706362
SVOP_chr12_108902741_109026068	1/1	c0001	1647	180	44	37	66	5	26	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	c0002	1647	90	39	18	22	3	8	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	c0003	1647	9	4	1	4	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	c0004	1647	6	1	2	3	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	c0005	1647	2	0	0	2	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	c0006	1647	1	0	0	1	0	0	copy fasta	SVOP	chr12	108902741	109026068
SWAP70_chr11_9659077_9757993	0/1	c0001	1758	85	30	13	21	8	12	copy fasta	SWAP70	chr11	9659077	9757993
SWAP70_chr11_9659077_9757993	1/0	c0002	1758	74	11	12	39	2	9	copy fasta	SWAP70	chr11	9659077	9757993
SWAP70_chr11_9659077_9757993	0/0	c0003	1758	74	18	11	44	0	1	copy fasta	SWAP70	chr11	9659077	9757993
SWAP70_chr11_9659077_9757993	0/0	c0004	1758	42	10	10	16	2	4	copy fasta	SWAP70	chr11	9659077	9757993
SWAP70_chr11_9659077_9757993	0/0	c0005	1758	6	3	2	0	0	1	copy fasta	SWAP70	chr11	9659077	9757993
SWAP70_chr11_9659077_9757993	0/0	c0006	1758	3	2	1	0	0	0	copy fasta	SWAP70	chr11	9659077	9757993
SWAP70_chr11_9659077_9757993	0/0	c0007	1758	3	3	0	0	0	0	copy fasta	SWAP70	chr11	9659077	9757993
SWAP70_chr11_9659077_9757993	0/0	c0008	1758	3	1	0	1	0	1	copy fasta	SWAP70	chr11	9659077	9757993
SWAP70_chr11_9659077_9757993	0/0	c0009	1758	2	0	2	0	0	0	copy fasta	SWAP70	chr11	9659077	9757993
SWAP70_chr11_9659077_9757993	0/0	c0010	1758	1	0	0	1	0	0	copy fasta	SWAP70	chr11	9659077	9757993
SWAP70_chr11_9659077_9757993	0/0	c0011	1758	1	0	1	0	0	0	copy fasta	SWAP70	chr11	9659077	9757993
SWI5_chr9_128271276_128293989	1/1	c0001	393	363	69	53	185	14	40	copy fasta	SWI5	chr9	128271276	128293989
SWI5_chr9_128271276_128293989	0/0	c0002	393	22	19	3	0	0	0	copy fasta	SWI5	chr9	128271276	128293989
SWI5_chr9_128271276_128293989	0/0	c0003	393	1	0	0	1	0	0	copy fasta	SWI5	chr9	128271276	128293989
SWSAP1_chr19_11369666_11381169	1/1	c0001	753	386	83	71	170	16	44	copy fasta	SWSAP1	chr19	11369666	11381169
SWSAP1_chr19_11369666_11381169	0/0	c0002	753	9	8	1	0	0	0	copy fasta	SWSAP1	chr19	11369666	11381169
SWSAP1_chr19_11369666_11381169	0/0	c0003	753	4	4	0	0	0	0	copy fasta	SWSAP1	chr19	11369666	11381169
SWSAP1_chr19_11369666_11381169	0/0	c0004	753	1	1	0	0	0	0	copy fasta	SWSAP1	chr19	11369666	11381169
SWSAP1_chr19_11369666_11381169	0/0	c0005	753	1	1	0	0	0	0	copy fasta	SWSAP1	chr19	11369666	11381169
SWSAP1_chr19_11369666_11381169	0/0	c0006	753	1	1	0	0	0	0	copy fasta	SWSAP1	chr19	11369666	11381169
SWT1_chr1_185152167_185296781	1/1	c0001	2703	117	10	26	63	6	10	copy fasta	SWT1	chr1	185152167	185296781
SWT1_chr1_185152167_185296781	0/0	c0002	2703	44	13	10	14	4	3	copy fasta	SWT1	chr1	185152167	185296781
SWT1_chr1_185152167_185296781	0/0	c0003	2703	41	16	6	17	1	1	copy fasta	SWT1	chr1	185152167	185296781
SWT1_chr1_185152167_185296781	0/0	c0004	2703	28	3	9	11	0	5	copy fasta	SWT1	chr1	185152167	185296781