JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SWT1_chr1_185152167_185296781	0/0	c0005	2703	26	25	1	0	0	0	copy fasta	SWT1	chr1	185152167	185296781
SWT1_chr1_185152167_185296781	0/0	c0006	2703	21	7	8	4	0	2	copy fasta	SWT1	chr1	185152167	185296781
SWT1_chr1_185152167_185296781	0/0	c0007	2703	10	0	0	10	0	0	copy fasta	SWT1	chr1	185152167	185296781
SWT1_chr1_185152167_185296781	0/0	c0008	2703	7	6	0	1	0	0	copy fasta	SWT1	chr1	185152167	185296781
SWT1_chr1_185152167_185296781	0/0	c0009	2703	6	0	2	1	1	2	copy fasta	SWT1	chr1	185152167	185296781
SWT1_chr1_185152167_185296781	0/0	c0010	2703	5	5	0	0	0	0	copy fasta	SWT1	chr1	185152167	185296781
SWT1_chr1_185152167_185296781	0/0	c0011	2703	4	1	2	1	0	0	copy fasta	SWT1	chr1	185152167	185296781
SWT1_chr1_185152167_185296781	0/0	c0012	2703	3	3	0	0	0	0	copy fasta	SWT1	chr1	185152167	185296781
SWT1_chr1_185152167_185296781	0/0	c0013	2703	2	0	0	2	0	0	copy fasta	SWT1	chr1	185152167	185296781
SWT1_chr1_185152167_185296781	0/0	c0014	2703	2	0	0	2	0	0	copy fasta	SWT1	chr1	185152167	185296781
SWT1_chr1_185152167_185296781	0/0	c0015	2703	1	0	0	1	0	0	copy fasta	SWT1	chr1	185152167	185296781
SWT1_chr1_185152167_185296781	0/0	c0016	2703	1	0	0	0	0	1	copy fasta	SWT1	chr1	185152167	185296781
SWT1_chr1_185152167_185296781	0/0	c0017	2703	1	0	1	0	0	0	copy fasta	SWT1	chr1	185152167	185296781
SWT1_chr1_185152167_185296781	0/0	c0018	2703	1	0	1	0	0	0	copy fasta	SWT1	chr1	185152167	185296781
SWT1_chr1_185152167_185296781	0/0	c0019	2703	1	0	0	1	0	0	copy fasta	SWT1	chr1	185152167	185296781
SWT1_chr1_185152167_185296781	0/0	c0020	2703	1	1	0	0	0	0	copy fasta	SWT1	chr1	185152167	185296781
SWT1_chr1_185152167_185296781	0/0	c0021	2703	1	1	0	0	0	0	copy fasta	SWT1	chr1	185152167	185296781
SWT1_chr1_185152167_185296781	0/0	c0022	2703	1	1	0	0	0	0	copy fasta	SWT1	chr1	185152167	185296781
SWT1_chr1_185152167_185296781	0/0	c0023	2703	1	0	1	0	0	0	copy fasta	SWT1	chr1	185152167	185296781
SWT1_chr1_185152167_185296781	0/0	c0024	2703	1	0	1	0	0	0	copy fasta	SWT1	chr1	185152167	185296781
SYAP1_chrX_16714612_16770340	1/1	c0001	1059	283	69	54	121	11	26	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	0/0	c0002	1059	3	3	0	0	0	0	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	0/0	c0003	1059	2	0	0	2	0	0	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	0/0	c0004	1060	1	0	0	1	0	0	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	0/0	c0005	1060	1	0	0	1	0	0	copy fasta	SYAP1	chrX	16714612	16770340
SYBU_chr8_109568978_109649822	1/1	c0001	1992	234	57	43	104	8	20	copy fasta	SYBU	chr8	109568978	109649822
SYBU_chr8_109568978_109649822	0/0	c0002	1992	37	9	14	0	3	11	copy fasta	SYBU	chr8	109568978	109649822
SYBU_chr8_109568978_109649822	0/0	c0003	1992	21	20	1	0	0	0	copy fasta	SYBU	chr8	109568978	109649822
SYBU_chr8_109568978_109649822	0/0	c0004	1992	8	0	5	0	2	1	copy fasta	SYBU	chr8	109568978	109649822
SYBU_chr8_109568978_109649822	0/0	c0005	1992	7	6	1	0	0	0	copy fasta	SYBU	chr8	109568978	109649822
SYBU_chr8_109568978_109649822	0/0	c0006	1992	6	0	5	0	1	0	copy fasta	SYBU	chr8	109568978	109649822
SYBU_chr8_109568978_109649822	0/0	c0007	1992	4	0	0	2	0	2	copy fasta	SYBU	chr8	109568978	109649822
SYBU_chr8_109568978_109649822	0/0	c0008	1992	2	0	0	2	0	0	copy fasta	SYBU	chr8	109568978	109649822
SYBU_chr8_109568978_109649822	0/0	c0009	1992	1	1	0	0	0	0	copy fasta	SYBU	chr8	109568978	109649822
SYBU_chr8_109568978_109649822	0/0	c0010	1992	1	0	0	0	0	1	copy fasta	SYBU	chr8	109568978	109649822
SYBU_chr8_109568978_109649822	0/0	c0011	1992	1	0	0	0	0	1	copy fasta	SYBU	chr8	109568978	109649822
SYBU_chr8_109568978_109649822	0/0	c0012	1992	1	0	1	0	0	0	copy fasta	SYBU	chr8	109568978	109649822
SYBU_chr8_109568978_109649822	0/0	c0013	1992	1	1	0	0	0	0	copy fasta	SYBU	chr8	109568978	109649822
SYCE1L_chr16_77194408_77218215	0/1	c0001	729	186	60	25	76	5	19	copy fasta	SYCE1L	chr16	77194408	77218215
SYCE1L_chr16_77194408_77218215	0/0	c0002	729	79	6	6	59	2	6	copy fasta	SYCE1L	chr16	77194408	77218215
SYCE1L_chr16_77194408_77218215	0/0	c0003	729	75	1	26	37	6	5	copy fasta	SYCE1L	chr16	77194408	77218215
SYCE1L_chr16_77194408_77218215	0/0	c0004	729	52	1	12	36	1	2	copy fasta	SYCE1L	chr16	77194408	77218215
SYCE1L_chr16_77194408_77218215	0/0	c0005	729	12	2	5	2	0	3	copy fasta	SYCE1L	chr16	77194408	77218215
SYCE1L_chr16_77194408_77218215	0/0	c0006	729	9	4	0	0	0	5	copy fasta	SYCE1L	chr16	77194408	77218215
SYCE1L_chr16_77194408_77218215	1/0	c0007	729	8	7	0	0	0	0	copy fasta	SYCE1L	chr16	77194408	77218215
SYCE1L_chr16_77194408_77218215	0/0	c0008	729	7	7	0	0	0	0	copy fasta	SYCE1L	chr16	77194408	77218215
SYCE1L_chr16_77194408_77218215	0/0	c0009	729	6	6	0	0	0	0	copy fasta	SYCE1L	chr16	77194408	77218215
SYCE1L_chr16_77194408_77218215	0/0	c0010	729	3	3	0	0	0	0	copy fasta	SYCE1L	chr16	77194408	77218215
SYCE1L_chr16_77194408_77218215	0/0	c0011	729	2	1	1	0	0	0	copy fasta	SYCE1L	chr16	77194408	77218215
SYCE1L_chr16_77194408_77218215	0/0	c0012	648	1	0	1	0	0	0	copy fasta	SYCE1L	chr16	77194408	77218215