JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SYCE1L_chr16_77194408_77218215	0/0	c0013	729	1	0	0	1	0	0	copy fasta	SYCE1L	chr16	77194408	77218215
SYCE1L_chr16_77194408_77218215	0/0	c0014	729	1	0	0	1	0	0	copy fasta	SYCE1L	chr16	77194408	77218215
SYCE1_chr10_133549847_133570583	1/1	c0001	1056	278	65	49	127	5	30	copy fasta	SYCE1	chr10	133549847	133570583
SYCE1_chr10_133549847_133570583	0/0	c0002	1056	85	0	14	62	3	6	copy fasta	SYCE1	chr10	133549847	133570583
SYCE1_chr10_133549847_133570583	0/0	c0003	1056	15	14	1	0	0	0	copy fasta	SYCE1	chr10	133549847	133570583
SYCE1_chr10_133549847_133570583	0/0	c0004	1056	2	2	0	0	0	0	copy fasta	SYCE1	chr10	133549847	133570583
SYCE1_chr10_133549847_133570583	0/0	c0005	1056	1	1	0	0	0	0	copy fasta	SYCE1	chr10	133549847	133570583
SYCE1_chr10_133549847_133570583	0/0	c0006	1056	1	0	0	1	0	0	copy fasta	SYCE1	chr10	133549847	133570583
SYCE1_chr10_133549847_133570583	0/0	c0007	1056	1	1	0	0	0	0	copy fasta	SYCE1	chr10	133549847	133570583
SYCE1_chr10_133549847_133570583	0/0	c0008	1056	1	1	0	0	0	0	copy fasta	SYCE1	chr10	133549847	133570583
SYCE2_chr19_12893786_12924293	1/1	c0001	657	375	93	78	148	16	38	copy fasta	SYCE2	chr19	12893786	12924293
SYCE2_chr19_12893786_12924293	0/0	c0002	657	2	0	0	2	0	0	copy fasta	SYCE2	chr19	12893786	12924293
SYCE2_chr19_12893786_12924293	0/0	c0003	657	1	1	0	0	0	0	copy fasta	SYCE2	chr19	12893786	12924293
SYCE3_chr22_50546112_50567919	1/1	c0001	267	380	78	69	177	11	43	copy fasta	SYCE3	chr22	50546112	50567919
SYCE3_chr22_50546112_50567919	0/0	c0002	267	30	19	2	3	1	5	copy fasta	SYCE3	chr22	50546112	50567919
SYCE3_chr22_50546112_50567919	0/0	c0003	267	3	0	3	0	0	0	copy fasta	SYCE3	chr22	50546112	50567919
SYCE3_chr22_50546112_50567919	0/0	c0004	267	1	1	0	0	0	0	copy fasta	SYCE3	chr22	50546112	50567919
SYCN_chr19_39197825_39209263	1/1	c0001	405	367	74	76	153	18	44	copy fasta	SYCN	chr19	39197825	39209263
SYCN_chr19_39197825_39209263	0/0	c0002	405	8	8	0	0	0	0	copy fasta	SYCN	chr19	39197825	39209263
SYCN_chr19_39197825_39209263	0/0	c0003	405	1	0	0	1	0	0	copy fasta	SYCN	chr19	39197825	39209263
SYCP1_chr1_114849863_115000370	1/0	c0001	2931	262	58	47	120	14	22	copy fasta	SYCP1	chr1	114849863	115000370
SYCP1_chr1_114849863_115000370	0/0	c0002	2931	14	5	3	2	0	4	copy fasta	SYCP1	chr1	114849863	115000370
SYCP1_chr1_114849863_115000370	0/0	c0003	2931	10	9	1	0	0	0	copy fasta	SYCP1	chr1	114849863	115000370
SYCP1_chr1_114849863_115000370	0/0	c0004	2931	6	6	0	0	0	0	copy fasta	SYCP1	chr1	114849863	115000370
SYCP1_chr1_114849863_115000370	0/0	c0005	2931	6	0	0	6	0	0	copy fasta	SYCP1	chr1	114849863	115000370
SYCP1_chr1_114849863_115000370	0/0	c0006	2931	4	4	0	0	0	0	copy fasta	SYCP1	chr1	114849863	115000370
SYCP1_chr1_114849863_115000370	0/0	c0007	2931	3	2	1	0	0	0	copy fasta	SYCP1	chr1	114849863	115000370
SYCP1_chr1_114849863_115000370	0/0	c0008	2931	2	0	2	0	0	0	copy fasta	SYCP1	chr1	114849863	115000370
SYCP1_chr1_114849863_115000370	0/0	c0009	2931	1	0	1	0	0	0	copy fasta	SYCP1	chr1	114849863	115000370
SYCP1_chr1_114849863_115000370	0/0	c0010	2931	1	0	0	1	0	0	copy fasta	SYCP1	chr1	114849863	115000370
SYCP1_chr1_114849863_115000370	0/0	c0011	2931	1	0	1	0	0	0	copy fasta	SYCP1	chr1	114849863	115000370
SYCP1_chr1_114849863_115000370	0/1	c0012	2931	1	0	0	0	0	0	copy fasta	SYCP1	chr1	114849863	115000370
SYCP1_chr1_114849863_115000370	0/0	c0013	2931	1	0	0	1	0	0	copy fasta	SYCP1	chr1	114849863	115000370
SYCP2L_chr6_10882052_10979309	0/0	c0001	2439	147	37	43	41	6	20	copy fasta	SYCP2L	chr6	10882052	10979309
SYCP2L_chr6_10882052_10979309	0/1	c0002	2439	65	0	3	49	2	10	copy fasta	SYCP2L	chr6	10882052	10979309
SYCP2L_chr6_10882052_10979309	0/0	c0003	2439	44	18	3	18	4	1	copy fasta	SYCP2L	chr6	10882052	10979309
SYCP2L_chr6_10882052_10979309	0/0	c0004	2439	16	0	1	14	0	1	copy fasta	SYCP2L	chr6	10882052	10979309
SYCP2L_chr6_10882052_10979309	0/0	c0005	2439	14	11	0	3	0	0	copy fasta	SYCP2L	chr6	10882052	10979309
SYCP2L_chr6_10882052_10979309	0/0	c0006	2439	8	0	0	8	0	0	copy fasta	SYCP2L	chr6	10882052	10979309
SYCP2L_chr6_10882052_10979309	0/0	c0007	2439	7	7	0	0	0	0	copy fasta	SYCP2L	chr6	10882052	10979309
SYCP2L_chr6_10882052_10979309	0/0	c0008	2439	7	0	0	5	0	2	copy fasta	SYCP2L	chr6	10882052	10979309
SYCP2L_chr6_10882052_10979309	0/0	c0009	2439	5	0	3	0	2	0	copy fasta	SYCP2L	chr6	10882052	10979309
SYCP2L_chr6_10882052_10979309	0/0	c0010	2439	4	0	0	4	0	0	copy fasta	SYCP2L	chr6	10882052	10979309
SYCP2L_chr6_10882052_10979309	0/0	c0011	2439	4	4	0	0	0	0	copy fasta	SYCP2L	chr6	10882052	10979309
SYCP2L_chr6_10882052_10979309	0/0	c0012	2439	4	3	1	0	0	0	copy fasta	SYCP2L	chr6	10882052	10979309
SYCP2L_chr6_10882052_10979309	0/0	c0013	2439	3	3	0	0	0	0	copy fasta	SYCP2L	chr6	10882052	10979309
SYCP2L_chr6_10882052_10979309	0/0	c0014	2439	3	2	0	1	0	0	copy fasta	SYCP2L	chr6	10882052	10979309
SYCP2L_chr6_10882052_10979309	0/0	c0015	2439	3	0	2	0	0	1	copy fasta	SYCP2L	chr6	10882052	10979309
SYCP2L_chr6_10882052_10979309	1/0	c0016	2439	2	1	0	0	0	0	copy fasta	SYCP2L	chr6	10882052	10979309
SYCP2L_chr6_10882052_10979309	0/0	c0017	2439	2	2	0	0	0	0	copy fasta	SYCP2L	chr6	10882052	10979309