JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SYCP2L_chr6_10882052_10979309	0/0	c0018	2439	2	0	2	0	0	0	copy fasta	SYCP2L	chr6	10882052	10979309
SYCP2L_chr6_10882052_10979309	0/0	c0019	2439	2	0	0	2	0	0	copy fasta	SYCP2L	chr6	10882052	10979309
SYCP2L_chr6_10882052_10979309	0/0	c0020	2439	1	0	1	0	0	0	copy fasta	SYCP2L	chr6	10882052	10979309
SYCP2L_chr6_10882052_10979309	0/0	c0021	2439	1	1	0	0	0	0	copy fasta	SYCP2L	chr6	10882052	10979309
SYCP2L_chr6_10882052_10979309	0/0	c0022	2439	1	1	0	0	0	0	copy fasta	SYCP2L	chr6	10882052	10979309
SYCP2L_chr6_10882052_10979309	0/0	c0023	2439	1	1	0	0	0	0	copy fasta	SYCP2L	chr6	10882052	10979309
SYCP2L_chr6_10882052_10979309	0/0	c0024	2439	1	1	0	0	0	0	copy fasta	SYCP2L	chr6	10882052	10979309
SYCP2L_chr6_10882052_10979309	0/0	c0025	2439	1	1	0	0	0	0	copy fasta	SYCP2L	chr6	10882052	10979309
SYCP2L_chr6_10882052_10979309	0/0	c0026	2439	1	1	0	0	0	0	copy fasta	SYCP2L	chr6	10882052	10979309
SYCP2L_chr6_10882052_10979309	0/0	c0027	2439	1	0	0	0	0	1	copy fasta	SYCP2L	chr6	10882052	10979309
SYCP2L_chr6_10882052_10979309	0/0	c0028	2439	1	0	0	1	0	0	copy fasta	SYCP2L	chr6	10882052	10979309
SYCP2L_chr6_10882052_10979309	0/0	c0029	2439	1	1	0	0	0	0	copy fasta	SYCP2L	chr6	10882052	10979309
SYCP2L_chr6_10882052_10979309	0/0	c0030	2439	1	0	1	0	0	0	copy fasta	SYCP2L	chr6	10882052	10979309
SYCP2L_chr6_10882052_10979309	0/0	c0031	2439	1	1	0	0	0	0	copy fasta	SYCP2L	chr6	10882052	10979309
SYCP2_chr20_59858571_59938637	1/1	c0001	4593	197	44	38	90	11	12	copy fasta	SYCP2	chr20	59858571	59938637
SYCP2_chr20_59858571_59938637	0/0	c0002	4593	17	6	1	9	0	1	copy fasta	SYCP2	chr20	59858571	59938637
SYCP2_chr20_59858571_59938637	0/0	c0003	4593	17	10	2	5	0	0	copy fasta	SYCP2	chr20	59858571	59938637
SYCP2_chr20_59858571_59938637	0/0	c0004	4593	6	6	0	0	0	0	copy fasta	SYCP2	chr20	59858571	59938637
SYCP2_chr20_59858571_59938637	0/0	c0005	4593	5	5	0	0	0	0	copy fasta	SYCP2	chr20	59858571	59938637
SYCP2_chr20_59858571_59938637	0/0	c0006	4593	5	0	5	0	0	0	copy fasta	SYCP2	chr20	59858571	59938637
SYCP2_chr20_59858571_59938637	0/0	c0007	4593	4	0	0	4	0	0	copy fasta	SYCP2	chr20	59858571	59938637
SYCP2_chr20_59858571_59938637	0/0	c0008	4593	4	0	0	1	0	3	copy fasta	SYCP2	chr20	59858571	59938637
SYCP2_chr20_59858571_59938637	0/0	c0009	4593	3	0	3	0	0	0	copy fasta	SYCP2	chr20	59858571	59938637
SYCP2_chr20_59858571_59938637	0/0	c0010	4593	3	3	0	0	0	0	copy fasta	SYCP2	chr20	59858571	59938637
SYCP2_chr20_59858571_59938637	0/0	c0011	4593	2	2	0	0	0	0	copy fasta	SYCP2	chr20	59858571	59938637
SYCP2_chr20_59858571_59938637	0/0	c0012	4593	2	0	0	0	1	1	copy fasta	SYCP2	chr20	59858571	59938637
SYCP2_chr20_59858571_59938637	0/0	c0013	4593	1	0	0	1	0	0	copy fasta	SYCP2	chr20	59858571	59938637
SYCP2_chr20_59858571_59938637	0/0	c0014	4593	1	0	1	0	0	0	copy fasta	SYCP2	chr20	59858571	59938637
SYCP2_chr20_59858571_59938637	0/0	c0015	4593	1	1	0	0	0	0	copy fasta	SYCP2	chr20	59858571	59938637
SYCP2_chr20_59858571_59938637	0/0	c0016	4593	1	0	0	1	0	0	copy fasta	SYCP2	chr20	59858571	59938637
SYCP2_chr20_59858571_59938637	0/0	c0017	4593	1	0	1	0	0	0	copy fasta	SYCP2	chr20	59858571	59938637
SYCP2_chr20_59858571_59938637	0/0	c0018	4593	1	0	0	0	0	1	copy fasta	SYCP2	chr20	59858571	59938637
SYCP2_chr20_59858571_59938637	0/0	c0019	4593	1	0	0	1	0	0	copy fasta	SYCP2	chr20	59858571	59938637
SYCP2_chr20_59858571_59938637	0/0	c0020	4593	1	0	0	0	0	1	copy fasta	SYCP2	chr20	59858571	59938637
SYCP2_chr20_59858571_59938637	0/0	c0021	4593	1	1	0	0	0	0	copy fasta	SYCP2	chr20	59858571	59938637
SYCP2_chr20_59858571_59938637	0/0	c0022	4593	1	0	1	0	0	0	copy fasta	SYCP2	chr20	59858571	59938637
SYCP2_chr20_59858571_59938637	0/0	c0023	4593	1	0	0	0	0	1	copy fasta	SYCP2	chr20	59858571	59938637
SYCP3_chr12_101723648_101744462	1/1	c0001	711	419	92	72	199	18	36	copy fasta	SYCP3	chr12	101723648	101744462
SYCP3_chr12_101723648_101744462	0/0	c0002	711	4	4	0	0	0	0	copy fasta	SYCP3	chr12	101723648	101744462
SYCP3_chr12_101723648_101744462	0/0	c0003	711	3	0	0	3	0	0	copy fasta	SYCP3	chr12	101723648	101744462
SYDE1_chr19_15102401_15119974	1/1	c0001	2208	286	82	55	107	13	27	copy fasta	SYDE1	chr19	15102401	15119974
SYDE1_chr19_15102401_15119974	0/0	c0002	2208	112	4	24	63	2	19	copy fasta	SYDE1	chr19	15102401	15119974
SYDE1_chr19_15102401_15119974	0/0	c0003	2208	7	1	1	1	1	3	copy fasta	SYDE1	chr19	15102401	15119974
SYDE1_chr19_15102401_15119974	0/0	c0004	2208	3	0	0	3	0	0	copy fasta	SYDE1	chr19	15102401	15119974
SYDE1_chr19_15102401_15119974	0/0	c0005	2208	2	0	0	2	0	0	copy fasta	SYDE1	chr19	15102401	15119974
SYDE1_chr19_15102401_15119974	0/0	c0006	2208	2	2	0	0	0	0	copy fasta	SYDE1	chr19	15102401	15119974
SYDE1_chr19_15102401_15119974	0/0	c0007	2208	2	2	0	0	0	0	copy fasta	SYDE1	chr19	15102401	15119974
SYDE1_chr19_15102401_15119974	0/0	c0008	2208	2	2	0	0	0	0	copy fasta	SYDE1	chr19	15102401	15119974
SYDE1_chr19_15102401_15119974	0/0	c0009	2208	1	0	0	1	0	0	copy fasta	SYDE1	chr19	15102401	15119974
SYDE1_chr19_15102401_15119974	0/0	c0010	2208	1	1	0	0	0	0	copy fasta	SYDE1	chr19	15102401	15119974