JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
B3GNT7_chr2_231390710_231406164	0/0	c0011	1206	1	0	0	0	1	0	copy fasta	B3GNT7	chr2	231390710	231406164
B3GNT8_chr19_41420359_41432374	0/0	c0001	1194	183	33	26	86	10	28	copy fasta	B3GNT8	chr19	41420359	41432374
B3GNT8_chr19_41420359_41432374	1/0	c0002	1194	158	21	33	85	4	14	copy fasta	B3GNT8	chr19	41420359	41432374
B3GNT8_chr19_41420359_41432374	0/0	c0003	1194	19	17	2	0	0	0	copy fasta	B3GNT8	chr19	41420359	41432374
B3GNT8_chr19_41420359_41432374	0/1	c0004	1194	15	3	7	0	2	2	copy fasta	B3GNT8	chr19	41420359	41432374
B3GNT8_chr19_41420359_41432374	0/0	c0005	1194	13	0	0	13	0	0	copy fasta	B3GNT8	chr19	41420359	41432374
B3GNT8_chr19_41420359_41432374	0/0	c0006	1194	7	7	0	0	0	0	copy fasta	B3GNT8	chr19	41420359	41432374
B3GNT8_chr19_41420359_41432374	0/0	c0007	1194	7	7	0	0	0	0	copy fasta	B3GNT8	chr19	41420359	41432374
B3GNT8_chr19_41420359_41432374	0/0	c0008	1194	3	3	0	0	0	0	copy fasta	B3GNT8	chr19	41420359	41432374
B3GNT8_chr19_41420359_41432374	0/0	c0009	1194	3	0	3	0	0	0	copy fasta	B3GNT8	chr19	41420359	41432374
B3GNT8_chr19_41420359_41432374	0/0	c0010	1194	2	2	0	0	0	0	copy fasta	B3GNT8	chr19	41420359	41432374
B3GNT8_chr19_41420359_41432374	0/0	c0011	1194	1	1	0	0	0	0	copy fasta	B3GNT8	chr19	41420359	41432374
B3GNT8_chr19_41420359_41432374	0/0	c0012	1194	1	0	1	0	0	0	copy fasta	B3GNT8	chr19	41420359	41432374
B3GNT8_chr19_41420359_41432374	0/0	c0013	1194	1	0	1	0	0	0	copy fasta	B3GNT8	chr19	41420359	41432374
B3GNT8_chr19_41420359_41432374	0/0	c0014	1194	1	1	0	0	0	0	copy fasta	B3GNT8	chr19	41420359	41432374
B3GNT8_chr19_41420359_41432374	0/0	c0015	1194	1	1	0	0	0	0	copy fasta	B3GNT8	chr19	41420359	41432374
B3GNT8_chr19_41420359_41432374	0/0	c0016	1194	1	0	1	0	0	0	copy fasta	B3GNT8	chr19	41420359	41432374
B3GNT8_chr19_41420359_41432374	0/0	c0017	1194	1	0	0	1	0	0	copy fasta	B3GNT8	chr19	41420359	41432374
B3GNT8_chr19_41420359_41432374	0/0	c0018	1194	1	0	0	0	0	1	copy fasta	B3GNT8	chr19	41420359	41432374
B3GNT8_chr19_41420359_41432374	0/0	c0019	1194	1	0	0	0	0	1	copy fasta	B3GNT8	chr19	41420359	41432374
B3GNT8_chr19_41420359_41432374	0/0	c0020	1194	1	0	0	1	0	0	copy fasta	B3GNT8	chr19	41420359	41432374
B3GNT9_chr16_67143104_67155998	1/1	c0001	1209	330	88	55	128	11	46	copy fasta	B3GNT9	chr16	67143104	67155998
B3GNT9_chr16_67143104_67155998	0/0	c0002	1209	3	3	0	0	0	0	copy fasta	B3GNT9	chr16	67143104	67155998
B3GNT9_chr16_67143104_67155998	0/0	c0003	1209	3	3	0	0	0	0	copy fasta	B3GNT9	chr16	67143104	67155998
B3GNT9_chr16_67143104_67155998	0/0	c0004	1209	2	1	1	0	0	0	copy fasta	B3GNT9	chr16	67143104	67155998
B3GNT9_chr16_67143104_67155998	0/0	c0005	1209	1	0	0	0	1	0	copy fasta	B3GNT9	chr16	67143104	67155998
B3GNT9_chr16_67143104_67155998	0/0	c0006	1209	1	0	0	1	0	0	copy fasta	B3GNT9	chr16	67143104	67155998
B3GNT9_chr16_67143104_67155998	0/0	c0007	1209	1	0	0	1	0	0	copy fasta	B3GNT9	chr16	67143104	67155998
B3GNT9_chr16_67143104_67155998	0/0	c0008	1209	1	1	0	0	0	0	copy fasta	B3GNT9	chr16	67143104	67155998
B3GNTL1_chr17_82937149_83056770	0/0	c0001	1041	58	16	19	13	6	4	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	c0002	1041	52	5	9	28	3	7	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	c0003	1041	20	8	0	10	0	2	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	c0004	1041	19	1	4	13	0	1	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	c0005	1041	19	2	10	6	1	0	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	c0006	1041	17	7	4	6	0	0	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	c0007	1041	14	2	4	8	0	0	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	c0008	1041	10	1	2	7	0	0	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	c0009	1041	10	0	1	6	2	1	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	c0010	1041	8	2	2	1	0	3	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	c0011	1041	8	8	0	0	0	0	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	c0012	1041	5	0	1	4	0	0	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	c0013	1041	4	1	3	0	0	0	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	c0014	1041	3	3	0	0	0	0	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	c0015	1041	2	0	0	2	0	0	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	c0016	1041	2	0	0	2	0	0	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	c0017	1041	2	2	0	0	0	0	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	c0018	1041	1	0	0	1	0	0	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	c0019	1041	1	1	0	0	0	0	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	c0020	1041	1	0	0	1	0	0	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	c0021	1041	1	1	0	0	0	0	copy fasta	B3GNTL1	chr17	82937149	83056770