JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SYDE1_chr19_15102401_15119974	0/0	c0011	2208	1	0	0	1	0	0	copy fasta	SYDE1	chr19	15102401	15119974
SYDE1_chr19_15102401_15119974	0/0	c0012	2208	1	0	0	0	0	1	copy fasta	SYDE1	chr19	15102401	15119974
SYDE1_chr19_15102401_15119974	0/0	c0013	2208	1	1	0	0	0	0	copy fasta	SYDE1	chr19	15102401	15119974
SYDE1_chr19_15102401_15119974	0/0	c0014	2208	1	1	0	0	0	0	copy fasta	SYDE1	chr19	15102401	15119974
SYDE2_chr1_85151889_85206016	0/1	c0001	3585	143	24	23	56	14	25	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	c0002	3585	97	6	20	60	1	10	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	c0003	3585	37	1	7	26	1	2	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	c0004	3585	20	6	12	0	2	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	c0005	3585	12	12	0	0	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	c0006	3585	11	0	4	7	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	c0007	3585	10	10	0	0	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	c0008	3585	9	9	0	0	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	c0009	3585	6	0	0	5	0	1	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	c0010	3585	5	0	0	5	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	c0011	3585	5	5	0	0	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	c0012	3585	4	0	4	0	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	c0013	3585	3	1	2	0	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	c0014	3585	3	0	0	3	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	c0015	3585	2	2	0	0	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	c0016	3585	2	0	0	2	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	c0017	3585	2	2	0	0	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	c0018	3585	2	0	0	2	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	c0019	3585	2	0	0	2	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	c0020	3585	2	2	0	0	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	c0021	3585	2	2	0	0	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	c0022	3585	2	1	1	0	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	c0023	3585	2	0	0	2	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	c0024	3585	1	0	0	0	0	1	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	c0025	3585	1	0	1	0	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	c0026	3585	1	0	1	0	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	c0027	3585	1	1	0	0	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	c0028	3585	1	0	1	0	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	c0029	3585	1	1	0	0	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	1/0	c0030	3585	1	0	0	0	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	c0031	3585	1	0	0	1	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	c0032	3585	1	1	0	0	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	c0033	3585	1	1	0	0	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	c0034	3585	1	0	0	0	0	1	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	c0035	3585	1	0	0	1	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	c0036	3585	1	0	0	1	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	c0037	3585	1	0	0	1	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	c0038	3585	1	1	0	0	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYF2_chr1_25217276_25237502	1/1	c0001	732	282	91	45	95	13	36	copy fasta	SYF2	chr1	25217276	25237502
SYF2_chr1_25217276_25237502	0/0	c0002	732	11	0	8	0	1	2	copy fasta	SYF2	chr1	25217276	25237502
SYF2_chr1_25217276_25237502	0/0	c0003	732	4	3	1	0	0	0	copy fasta	SYF2	chr1	25217276	25237502
SYF2_chr1_25217276_25237502	0/0	c0004	732	2	0	2	0	0	0	copy fasta	SYF2	chr1	25217276	25237502
SYF2_chr1_25217276_25237502	0/0	c0005	732	1	0	0	1	0	0	copy fasta	SYF2	chr1	25217276	25237502
SYK_chr9_90796819_90903549	1/1	c0001	1908	221	61	38	88	6	26	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	c0002	1908	62	6	17	37	1	1	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	c0003	1908	38	0	0	35	1	2	copy fasta	SYK	chr9	90796819	90903549