JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SYK_chr9_90796819_90903549	0/0	c0004	1908	20	5	8	1	0	6	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	c0005	1908	17	11	5	0	1	0	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	c0006	1908	3	1	2	0	0	0	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	c0007	1908	3	3	0	0	0	0	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	c0008	1908	3	3	0	0	0	0	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	c0009	1908	2	0	1	0	0	1	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	c0010	1908	2	0	0	2	0	0	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	c0011	1908	1	0	0	0	1	0	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	c0012	1908	1	0	1	0	0	0	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	c0013	1908	1	1	0	0	0	0	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	c0014	1908	1	1	0	0	0	0	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	c0015	1908	1	0	0	1	0	0	copy fasta	SYK	chr9	90796819	90903549
SYMPK_chr19_45810410_45868147	1/1	c0001	3825	129	32	33	38	8	16	copy fasta	SYMPK	chr19	45810410	45868147
SYMPK_chr19_45810410_45868147	0/0	c0002	3825	82	17	14	39	5	7	copy fasta	SYMPK	chr19	45810410	45868147
SYMPK_chr19_45810410_45868147	0/0	c0003	3825	63	2	1	58	1	1	copy fasta	SYMPK	chr19	45810410	45868147
SYMPK_chr19_45810410_45868147	0/0	c0004	3825	51	2	14	23	2	10	copy fasta	SYMPK	chr19	45810410	45868147
SYMPK_chr19_45810410_45868147	0/0	c0005	3825	23	13	5	0	2	3	copy fasta	SYMPK	chr19	45810410	45868147
SYMPK_chr19_45810410_45868147	0/0	c0006	3825	12	4	0	7	0	1	copy fasta	SYMPK	chr19	45810410	45868147
SYMPK_chr19_45810410_45868147	0/0	c0007	3825	10	7	3	0	0	0	copy fasta	SYMPK	chr19	45810410	45868147
SYMPK_chr19_45810410_45868147	0/0	c0008	3825	3	0	3	0	0	0	copy fasta	SYMPK	chr19	45810410	45868147
SYMPK_chr19_45810410_45868147	0/0	c0009	3825	3	2	1	0	0	0	copy fasta	SYMPK	chr19	45810410	45868147
SYMPK_chr19_45810410_45868147	0/0	c0010	3825	2	0	1	1	0	0	copy fasta	SYMPK	chr19	45810410	45868147
SYMPK_chr19_45810410_45868147	0/0	c0011	3825	1	0	0	1	0	0	copy fasta	SYMPK	chr19	45810410	45868147
SYMPK_chr19_45810410_45868147	0/0	c0012	3825	1	1	0	0	0	0	copy fasta	SYMPK	chr19	45810410	45868147
SYMPK_chr19_45810410_45868147	0/0	c0013	3825	1	1	0	0	0	0	copy fasta	SYMPK	chr19	45810410	45868147
SYMPK_chr19_45810410_45868147	0/0	c0014	3825	1	0	1	0	0	0	copy fasta	SYMPK	chr19	45810410	45868147
SYMPK_chr19_45810410_45868147	0/0	c0015	3825	1	0	0	1	0	0	copy fasta	SYMPK	chr19	45810410	45868147
SYMPK_chr19_45810410_45868147	0/0	c0016	3825	1	0	1	0	0	0	copy fasta	SYMPK	chr19	45810410	45868147
SYMPK_chr19_45810410_45868147	0/0	c0017	3825	1	0	0	1	0	0	copy fasta	SYMPK	chr19	45810410	45868147
SYMPK_chr19_45810410_45868147	0/0	c0018	3825	1	1	0	0	0	0	copy fasta	SYMPK	chr19	45810410	45868147
SYMPK_chr19_45810410_45868147	0/0	c0019	3825	1	0	1	0	0	0	copy fasta	SYMPK	chr19	45810410	45868147
SYMPK_chr19_45810410_45868147	0/0	c0020	3825	1	1	0	0	0	0	copy fasta	SYMPK	chr19	45810410	45868147
SYMPK_chr19_45810410_45868147	0/0	c0021	3825	1	1	0	0	0	0	copy fasta	SYMPK	chr19	45810410	45868147
SYMPK_chr19_45810410_45868147	0/0	c0022	3825	1	1	0	0	0	0	copy fasta	SYMPK	chr19	45810410	45868147
SYMPK_chr19_45810410_45868147	0/0	c0023	3825	1	1	0	0	0	0	copy fasta	SYMPK	chr19	45810410	45868147
SYMPK_chr19_45810410_45868147	0/0	c0024	3825	1	0	0	1	0	0	copy fasta	SYMPK	chr19	45810410	45868147
SYN1_chrX_47566901_47624857	1/1	c0001	2118	170	30	31	82	7	18	copy fasta	SYN1	chrX	47566901	47624857
SYN1_chrX_47566901_47624857	0/0	c0002	2118	87	38	18	21	4	6	copy fasta	SYN1	chrX	47566901	47624857
SYN1_chrX_47566901_47624857	0/0	c0003	2118	4	3	1	0	0	0	copy fasta	SYN1	chrX	47566901	47624857
SYN1_chrX_47566901_47624857	0/0	c0004	2119	2	0	1	1	0	0	copy fasta	SYN1	chrX	47566901	47624857
SYN1_chrX_47566901_47624857	0/0	c0005	2119	2	1	0	1	0	0	copy fasta	SYN1	chrX	47566901	47624857
SYN1_chrX_47566901_47624857	0/0	c0006	2118	2	2	0	0	0	0	copy fasta	SYN1	chrX	47566901	47624857
SYN1_chrX_47566901_47624857	0/0	c0007	2117	1	0	0	1	0	0	copy fasta	SYN1	chrX	47566901	47624857
SYN1_chrX_47566901_47624857	0/0	c0008	2118	1	0	1	0	0	0	copy fasta	SYN1	chrX	47566901	47624857
SYN1_chrX_47566901_47624857	0/0	c0009	2118	1	1	0	0	0	0	copy fasta	SYN1	chrX	47566901	47624857
SYN1_chrX_47566901_47624857	0/0	c0010	2119	1	1	0	0	0	0	copy fasta	SYN1	chrX	47566901	47624857
SYN1_chrX_47566901_47624857	0/0	c0011	2115	1	1	0	0	0	0	copy fasta	SYN1	chrX	47566901	47624857
SYN1_chrX_47566901_47624857	0/0	c0012	2118	1	0	0	1	0	0	copy fasta	SYN1	chrX	47566901	47624857
SYN1_chrX_47566901_47624857	0/0	c0013	2119	1	0	0	1	0	0	copy fasta	SYN1	chrX	47566901	47624857
SYN1_chrX_47566901_47624857	0/0	c0014	2119	1	0	1	0	0	0	copy fasta	SYN1	chrX	47566901	47624857