JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SYN1_chrX_47566901_47624857	0/0	c0015	2120	1	0	0	0	0	1	copy fasta	SYN1	chrX	47566901	47624857
SYN1_chrX_47566901_47624857	0/0	c0016	2118	1	1	0	0	0	0	copy fasta	SYN1	chrX	47566901	47624857
SYN1_chrX_47566901_47624857	0/0	c0017	2121	1	0	0	1	0	0	copy fasta	SYN1	chrX	47566901	47624857
SYN1_chrX_47566901_47624857	0/0	c0018	2118	1	0	1	0	0	0	copy fasta	SYN1	chrX	47566901	47624857
SYN1_chrX_47566901_47624857	0/0	c0019	2118	1	0	0	1	0	0	copy fasta	SYN1	chrX	47566901	47624857
SYN1_chrX_47566901_47624857	0/0	c0020	2118	1	0	0	0	0	1	copy fasta	SYN1	chrX	47566901	47624857
SYN1_chrX_47566901_47624857	0/0	c0021	2103	1	0	0	1	0	0	copy fasta	SYN1	chrX	47566901	47624857
SYN2_chr3_11999388_12197032	0/0	c0001	1761	118	41	19	53	2	3	copy fasta	SYN2	chr3	11999388	12197032
SYN2_chr3_11999388_12197032	0/0	c0002	1749	100	21	19	47	3	10	copy fasta	SYN2	chr3	11999388	12197032
SYN2_chr3_11999388_12197032	0/0	c0003	1761	21	15	2	3	0	1	copy fasta	SYN2	chr3	11999388	12197032
SYN2_chr3_11999388_12197032	0/0	c0004	1773	9	1	3	0	1	4	copy fasta	SYN2	chr3	11999388	12197032
SYN2_chr3_11999388_12197032	0/1	c0005	1761	8	0	2	4	0	1	copy fasta	SYN2	chr3	11999388	12197032
SYN2_chr3_11999388_12197032	0/0	c0006	1761	3	3	0	0	0	0	copy fasta	SYN2	chr3	11999388	12197032
SYN2_chr3_11999388_12197032	0/0	c0007	1737	1	0	1	0	0	0	copy fasta	SYN2	chr3	11999388	12197032
SYN2_chr3_11999388_12197032	1/0	c0008	1749	1	0	0	0	0	0	copy fasta	SYN2	chr3	11999388	12197032
SYN2_chr3_11999388_12197032	0/0	c0009	1749	1	0	0	0	0	1	copy fasta	SYN2	chr3	11999388	12197032
SYN2_chr3_11999388_12197032	0/0	c0010	1761	1	0	0	1	0	0	copy fasta	SYN2	chr3	11999388	12197032
SYN2_chr3_11999388_12197032	0/0	c0011	1761	1	1	0	0	0	0	copy fasta	SYN2	chr3	11999388	12197032
SYN3_chr22_32502820_33063381	0/0	c0001	1743	141	42	36	34	5	24	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	c0002	1743	27	21	1	0	0	5	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	c0003	1743	8	7	1	0	0	0	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	c0004	1743	5	5	0	0	0	0	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	c0005	1743	1	0	0	0	0	1	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	c0006	1743	1	0	0	0	1	0	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	c0007	1743	1	1	0	0	0	0	copy fasta	SYN3	chr22	32502820	33063381
SYNCRIP_chr6_85608976_85647886	1/1	c0001	1872	359	84	48	177	14	34	copy fasta	SYNCRIP	chr6	85608976	85647886
SYNCRIP_chr6_85608976_85647886	0/0	c0002	1872	2	0	2	0	0	0	copy fasta	SYNCRIP	chr6	85608976	85647886
SYNCRIP_chr6_85608976_85647886	0/0	c0003	1872	1	0	0	1	0	0	copy fasta	SYNCRIP	chr6	85608976	85647886
SYNCRIP_chr6_85608976_85647886	0/0	c0004	1872	1	0	0	1	0	0	copy fasta	SYNCRIP	chr6	85608976	85647886
SYNCRIP_chr6_85608976_85647886	0/0	c0005	1872	1	0	0	1	0	0	copy fasta	SYNCRIP	chr6	85608976	85647886
SYNC_chr1_32674906_32707770	0/1	c0001	1449	241	74	39	82	12	33	copy fasta	SYNC	chr1	32674906	32707770
SYNC_chr1_32674906_32707770	0/0	c0002	1449	39	0	14	23	0	2	copy fasta	SYNC	chr1	32674906	32707770
SYNC_chr1_32674906_32707770	1/0	c0003	1449	22	13	3	5	0	0	copy fasta	SYNC	chr1	32674906	32707770
SYNC_chr1_32674906_32707770	0/0	c0004	1449	8	5	3	0	0	0	copy fasta	SYNC	chr1	32674906	32707770
SYNC_chr1_32674906_32707770	0/0	c0005	1449	4	3	1	0	0	0	copy fasta	SYNC	chr1	32674906	32707770
SYNC_chr1_32674906_32707770	0/0	c0006	1449	1	0	0	0	0	1	copy fasta	SYNC	chr1	32674906	32707770
SYNC_chr1_32674906_32707770	0/0	c0007	1449	1	1	0	0	0	0	copy fasta	SYNC	chr1	32674906	32707770
SYNC_chr1_32674906_32707770	0/0	c0008	1449	1	0	0	1	0	0	copy fasta	SYNC	chr1	32674906	32707770
SYNC_chr1_32674906_32707770	0/0	c0009	1449	1	0	0	1	0	0	copy fasta	SYNC	chr1	32674906	32707770
SYNDIG1L_chr14_74400899_74431210	0/0	c0001	717	180	39	33	86	8	14	copy fasta	SYNDIG1L	chr14	74400899	74431210
SYNDIG1L_chr14_74400899_74431210	1/1	c0002	717	171	42	23	79	7	18	copy fasta	SYNDIG1L	chr14	74400899	74431210
SYNDIG1L_chr14_74400899_74431210	0/0	c0003	717	41	7	12	16	1	5	copy fasta	SYNDIG1L	chr14	74400899	74431210
SYNDIG1L_chr14_74400899_74431210	0/0	c0004	717	5	0	0	5	0	0	copy fasta	SYNDIG1L	chr14	74400899	74431210
SYNDIG1L_chr14_74400899_74431210	0/0	c0005	717	4	4	0	0	0	0	copy fasta	SYNDIG1L	chr14	74400899	74431210
SYNDIG1L_chr14_74400899_74431210	0/0	c0006	717	1	0	0	0	0	1	copy fasta	SYNDIG1L	chr14	74400899	74431210
SYNDIG1L_chr14_74400899_74431210	0/0	c0007	717	1	0	0	0	0	1	copy fasta	SYNDIG1L	chr14	74400899	74431210
SYNDIG1L_chr14_74400899_74431210	0/0	c0008	717	1	0	0	0	0	1	copy fasta	SYNDIG1L	chr14	74400899	74431210
SYNDIG1_chr20_24464629_24671616	1/1	c0001	777	259	78	48	86	11	34	copy fasta	SYNDIG1	chr20	24464629	24671616
SYNDIG1_chr20_24464629_24671616	0/0	c0002	777	5	5	0	0	0	0	copy fasta	SYNDIG1	chr20	24464629	24671616
SYNDIG1_chr20_24464629_24671616	0/0	c0003	777	3	0	0	0	1	2	copy fasta	SYNDIG1	chr20	24464629	24671616