JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SYNDIG1_chr20_24464629_24671616	0/0	c0004	777	2	2	0	0	0	0	copy fasta	SYNDIG1	chr20	24464629	24671616
SYNDIG1_chr20_24464629_24671616	0/0	c0005	777	1	1	0	0	0	0	copy fasta	SYNDIG1	chr20	24464629	24671616
SYNE1_chr6_152116687_152173312	0/0	c0001	2928	104	11	25	51	4	13	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	c0002	2928	78	19	4	49	2	4	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/1	c0003	2928	74	15	24	22	4	8	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	c0004	2928	24	1	1	17	3	2	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	c0005	2928	18	0	0	17	0	1	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	c0006	2928	17	0	4	10	0	3	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	c0007	2928	16	16	0	0	0	0	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	c0008	2928	12	0	1	8	0	3	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	1/0	c0009	2928	8	0	3	0	1	3	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	c0010	2928	8	3	3	0	0	2	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	c0011	2928	7	2	0	3	0	2	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	c0012	2928	6	0	0	4	1	1	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	c0013	2928	6	6	0	0	0	0	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	c0014	2928	5	0	1	4	0	0	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	c0015	2928	5	0	0	4	0	1	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	c0016	2928	5	0	5	0	0	0	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	c0017	2928	4	2	0	2	0	0	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	c0018	2928	4	2	2	0	0	0	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	c0019	2928	4	4	0	0	0	0	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	c0020	2928	3	0	1	0	2	0	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	c0021	2928	3	0	0	3	0	0	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	c0022	2928	3	3	0	0	0	0	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	c0023	2928	2	2	0	0	0	0	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	c0024	2928	1	1	0	0	0	0	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	c0025	2928	1	1	0	0	0	0	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	c0026	2928	1	1	0	0	0	0	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	c0027	2928	1	0	0	1	0	0	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	c0028	2928	1	0	0	0	0	1	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	c0029	2928	1	0	0	1	0	0	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	c0030	2928	1	1	0	0	0	0	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	c0031	2928	1	1	0	0	0	0	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	c0032	2928	1	1	0	0	0	0	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	c0033	2928	1	0	0	1	0	0	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	c0034	2928	1	0	1	0	0	0	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	c0035	2928	1	1	0	0	0	0	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	c0036	2928	1	1	0	0	0	0	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	c0037	2928	1	0	0	0	0	1	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	c0038	2928	1	0	0	0	0	1	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	c0039	2928	1	0	1	0	0	0	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	c0040	2928	1	0	0	0	1	0	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	c0041	2928	1	0	0	1	0	0	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	c0042	2928	1	1	0	0	0	0	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	c0043	2928	1	1	0	0	0	0	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152642362	0/0	c0001	26394	2	0	2	0	0	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	c0002	26394	2	0	2	0	0	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	c0003	26394	2	0	0	1	0	1	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	c0004	26394	2	0	0	2	0	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	c0005	26394	2	0	2	0	0	0	copy fasta	SYNE1	chr6	152116687	152642362