JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	SAS	cseq	genename	chr	start	end
SYNE1_chr6_152116687_152642362	0/0	c0056	26394	1	0	0	1	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	c0057	26394	1	0	0	1	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	c0058	26394	1	0	0	1	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	c0059	26394	1	0	0	0	1	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	c0060	26394	1	1	0	0	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	c0061	26394	1	0	0	1	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	c0062	26394	1	0	0	1	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	c0063	26394	1	0	1	0	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	c0064	26394	1	0	0	1	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	c0065	26394	1	0	0	0	1	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	c0066	26394	1	0	0	1	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	c0067	26394	1	1	0	0	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	c0068	26394	1	1	0	0	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	c0069	26394	1	1	0	0	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	c0070	26394	1	1	0	0	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	c0071	26394	1	1	0	0	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	c0072	26394	1	1	0	0	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	c0073	26394	1	0	1	0	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	c0074	26394	1	0	0	1	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	c0075	26394	1	0	0	1	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	c0076	26394	1	1	0	0	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	c0077	26394	1	0	0	1	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	c0078	26394	1	1	0	0	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	c0079	26394	1	0	0	1	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	c0080	26394	1	0	0	1	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	c0081	26394	1	0	0	1	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	c0082	26394	1	0	0	0	1	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	c0083	26394	1	0	1	0	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	c0084	26394	1	0	0	1	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	c0085	26394	1	0	1	0	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	c0086	26394	1	1	0	0	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	c0087	26394	1	0	0	1	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	c0088	26394	1	0	0	1	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	c0089	26394	1	0	0	1	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	c0090	26394	1	0	0	1	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	c0091	26394	1	0	0	1	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	c0092	26394	1	1	0	0	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	c0093	26394	1	0	0	1	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	c0094	26394	1	0	1	0	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	c0095	26394	1	1	0	0	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	c0096	26394	1	1	0	0	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	c0097	26394	1	0	0	1	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	c0098	26394	1	1	0	0	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	c0099	26394	1	1	0	0	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	c0100	26394	1	0	0	1	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	c0101	26394	1	1	0	0	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	c0102	26394	1	1	0	0	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	c0103	26394	1	1	0	0	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	c0104	26394	1	0	0	1	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	c0105	26394	1	1	0	0	0	copy fasta	SYNE1	chr6	152116687	152642362