JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SYNE2_chr14_63848004_64231433	0/0	c0040	20724	1	1	0	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	c0041	20724	1	0	0	1	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	c0042	20724	1	0	0	1	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	c0043	20724	1	0	0	0	0	1	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	c0044	20724	1	0	0	1	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	c0045	20724	1	1	0	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	c0046	20724	1	1	0	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	c0047	20724	1	0	0	0	0	1	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	c0048	20724	1	1	0	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	c0049	20724	1	0	0	0	1	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	c0050	20724	1	1	0	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	c0051	20724	1	0	0	1	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	c0052	20724	1	1	0	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	c0053	20724	1	0	0	0	0	1	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	c0054	20724	1	0	0	1	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	c0055	20724	1	0	0	1	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	c0056	20724	1	0	1	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	c0057	20724	1	0	1	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	c0058	20724	1	0	1	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	c0059	20724	1	0	0	0	0	1	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	c0060	20724	1	0	0	1	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	c0061	20724	1	0	0	1	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	c0062	20724	1	0	0	1	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	c0063	20724	1	1	0	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	c0064	20724	1	0	1	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	c0065	20724	1	0	0	0	0	1	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	c0066	20724	1	0	0	0	0	1	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	c0067	20724	1	0	0	0	0	1	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	c0068	20724	1	0	0	1	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	c0069	20724	1	0	0	0	0	1	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	c0070	20724	1	0	1	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	c0071	20724	1	1	0	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	c0072	20724	1	1	0	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	c0073	20724	1	0	0	0	0	1	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	c0074	20724	1	0	0	0	0	1	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	c0075	20724	1	1	0	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	c0076	20724	1	0	0	1	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	c0077	20724	1	0	0	1	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	c0078	20724	1	1	0	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	c0079	20724	1	1	0	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	1/0	c0080	20724	1	0	0	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	c0081	20724	1	0	1	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	c0082	20724	1	1	0	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/1	c0083	20724	1	0	0	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	c0084	20724	1	1	0	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	c0085	20724	1	0	1	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	c0086	20724	1	0	0	1	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	c0087	20724	1	0	0	1	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	c0088	20724	1	0	0	1	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	c0089	20724	1	0	0	1	0	0	copy fasta	SYNE2	chr14	63848004	64231433