JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SYNE2_chr14_63848004_64231433	0/0	c0090	20724	1	1	0	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	c0091	20724	1	1	0	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	c0092	20724	1	0	0	1	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	c0093	20724	1	1	0	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	c0094	20724	1	0	0	1	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	c0095	20724	1	1	0	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	c0096	20724	1	1	0	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	c0097	20724	1	1	0	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	c0098	20724	1	1	0	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	c0099	20724	1	1	0	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE3_chr14_95402266_95521650	0/0	c0001	2928	44	0	18	15	4	7	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	1/0	c0002	2928	37	2	9	19	1	5	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0003	2928	35	1	10	18	2	4	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0004	2928	30	1	11	13	3	2	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0005	2928	14	1	2	7	0	4	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0006	2928	12	0	4	7	0	1	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0007	2928	10	0	1	5	1	3	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0008	2925	9	0	0	9	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0009	2925	9	0	2	3	0	4	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0010	2925	7	0	0	6	0	1	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0011	2928	6	6	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0012	2928	6	6	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/1	c0013	2925	6	0	2	1	0	2	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0014	2928	6	0	0	6	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0015	2928	6	5	1	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0016	2925	5	0	0	5	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0017	2928	5	5	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0018	2925	5	0	0	5	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0019	2928	5	1	0	4	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0020	2928	4	0	0	1	1	2	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0021	2928	4	3	1	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0022	2928	4	4	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0023	2928	4	4	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0024	2928	4	4	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0025	2925	3	0	3	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0026	2925	3	0	2	0	0	1	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0027	2928	3	0	2	0	1	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0028	2925	3	3	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0029	2925	3	0	0	3	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0030	2928	3	3	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0031	2928	3	1	2	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0032	2928	3	2	1	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0033	2928	3	2	1	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0034	2925	3	0	0	1	0	2	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0035	2928	3	0	0	3	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0036	2925	2	2	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0037	2928	2	2	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0038	2928	2	2	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0039	2928	2	2	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0040	2928	2	2	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650