JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
B3GNTL1_chr17_82937149_83056770	0/0	c0022	1041	1	0	0	1	0	0	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	c0023	1041	1	1	0	0	0	0	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	c0024	1041	1	1	0	0	0	0	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	c0025	1041	1	0	1	0	0	0	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	c0026	1041	1	0	0	1	0	0	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	c0027	1041	1	0	0	1	0	0	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	c0028	1041	1	0	0	1	0	0	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	c0029	1041	1	1	0	0	0	0	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	c0030	1041	1	1	0	0	0	0	copy fasta	B3GNTL1	chr17	82937149	83056770
B4GALNT1_chr12_57618409_57638201	1/1	c0001	1602	289	48	51	148	9	31	copy fasta	B4GALNT1	chr12	57618409	57638201
B4GALNT1_chr12_57618409_57638201	0/0	c0002	1602	80	23	19	28	4	6	copy fasta	B4GALNT1	chr12	57618409	57638201
B4GALNT1_chr12_57618409_57638201	0/0	c0003	1602	9	7	1	0	0	1	copy fasta	B4GALNT1	chr12	57618409	57638201
B4GALNT1_chr12_57618409_57638201	0/0	c0004	1602	9	8	1	0	0	0	copy fasta	B4GALNT1	chr12	57618409	57638201
B4GALNT1_chr12_57618409_57638201	0/0	c0005	1602	8	6	2	0	0	0	copy fasta	B4GALNT1	chr12	57618409	57638201
B4GALNT1_chr12_57618409_57638201	0/0	c0006	1602	2	2	0	0	0	0	copy fasta	B4GALNT1	chr12	57618409	57638201
B4GALNT1_chr12_57618409_57638201	0/0	c0007	1602	2	0	1	0	0	1	copy fasta	B4GALNT1	chr12	57618409	57638201
B4GALNT1_chr12_57618409_57638201	0/0	c0008	1602	2	0	1	0	1	0	copy fasta	B4GALNT1	chr12	57618409	57638201
B4GALNT1_chr12_57618409_57638201	0/0	c0009	1602	1	0	0	1	0	0	copy fasta	B4GALNT1	chr12	57618409	57638201
B4GALNT1_chr12_57618409_57638201	0/0	c0010	1602	1	0	0	1	0	0	copy fasta	B4GALNT1	chr12	57618409	57638201
B4GALNT1_chr12_57618409_57638201	0/0	c0011	1602	1	0	0	0	0	1	copy fasta	B4GALNT1	chr12	57618409	57638201
B4GALNT1_chr12_57618409_57638201	0/0	c0012	1602	1	1	0	0	0	0	copy fasta	B4GALNT1	chr12	57618409	57638201
B4GALNT1_chr12_57618409_57638201	0/0	c0013	1602	1	1	0	0	0	0	copy fasta	B4GALNT1	chr12	57618409	57638201
B4GALNT2_chr17_49127769_49181840	0/1	c0001	1521	314	57	62	149	9	36	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	c0002	1521	32	13	6	5	2	6	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	c0003	1521	5	5	0	0	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	c0004	1521	5	5	0	0	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	c0005	1521	3	1	2	0	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	c0006	1521	3	3	0	0	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	c0007	1521	2	0	2	0	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	c0008	1521	2	2	0	0	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	c0009	1521	2	2	0	0	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	c0010	1521	2	0	0	0	1	1	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	1/0	c0011	1521	2	1	0	0	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	c0012	1521	2	0	0	2	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	c0013	1521	1	0	0	0	0	1	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	c0014	1521	1	0	0	1	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	c0015	1521	1	1	0	0	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	c0016	1521	1	0	0	1	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	c0017	1521	1	1	0	0	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	c0018	1521	1	1	0	0	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT3_chr12_454939_568509	0/0	c0001	2997	162	22	26	97	1	16	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	1/0	c0002	2997	44	3	15	15	4	6	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	c0003	2997	37	4	7	19	3	4	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	c0004	2997	25	13	4	0	1	7	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	c0005	2997	19	4	2	12	0	1	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	c0006	2997	15	7	1	6	0	1	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	c0007	2997	11	9	2	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	c0008	2997	11	11	0	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/1	c0009	2997	5	0	4	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509
B4GALNT3_chr12_454939_568509	0/0	c0010	2997	5	0	5	0	0	0	copy fasta	B4GALNT3	chr12	454939	568509