JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SYNE3_chr14_95402266_95521650	0/0	c0041	2928	2	1	0	1	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0042	2928	2	2	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0043	2925	2	0	0	2	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0044	2925	2	2	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0045	2928	1	0	0	1	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0046	2928	1	1	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0047	2928	1	1	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0048	2928	1	0	0	1	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0049	2928	1	0	0	1	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0050	2928	1	0	0	1	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0051	2925	1	0	0	1	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0052	2925	1	0	0	1	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0053	2928	1	1	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0054	2928	1	1	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0055	2925	1	0	0	1	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0056	2928	1	1	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0057	2928	1	0	0	1	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0058	2928	1	0	0	1	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0059	2928	1	0	1	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0060	2928	1	0	1	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0061	2928	1	1	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0062	2928	1	1	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0063	2928	1	1	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0064	2925	1	0	0	1	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0065	2928	1	0	0	1	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0066	2928	1	1	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0067	2928	1	0	0	1	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0068	2928	1	0	0	0	0	1	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0069	2928	1	0	1	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0070	2925	1	0	0	1	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0071	2928	1	0	0	0	1	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0072	2928	1	0	0	1	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0073	2928	1	1	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0074	2928	1	1	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0075	2928	1	1	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0076	2928	1	1	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0077	2928	1	0	0	1	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0078	2928	1	1	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0079	2925	1	1	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0080	2928	1	1	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0081	2925	1	1	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0082	2928	1	1	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0083	2928	1	0	0	0	0	1	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0084	2928	1	1	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0085	2928	1	1	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0086	2928	1	1	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0087	2928	1	1	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0088	2928	1	1	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0089	2925	1	0	0	0	0	1	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0090	2928	1	0	0	1	0	0	copy fasta	SYNE3	chr14	95402266	95521650