JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SYNE3_chr14_95402266_95521650	0/0	c0091	2928	1	1	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0092	2925	1	0	0	1	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0093	2928	1	1	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0094	2928	1	1	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0095	2928	1	0	0	1	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0096	2928	1	1	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0097	2928	1	1	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0098	2928	1	0	0	0	0	1	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0099	2928	1	0	1	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	c0100	2928	1	1	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE4_chr19_35998307_36013813	0/1	c0001	1215	181	28	42	74	10	26	copy fasta	SYNE4	chr19	35998307	36013813
SYNE4_chr19_35998307_36013813	0/0	c0002	1215	79	43	27	2	1	6	copy fasta	SYNE4	chr19	35998307	36013813
SYNE4_chr19_35998307_36013813	0/0	c0003	1215	39	0	2	31	1	5	copy fasta	SYNE4	chr19	35998307	36013813
SYNE4_chr19_35998307_36013813	1/0	c0004	1215	38	0	5	27	0	5	copy fasta	SYNE4	chr19	35998307	36013813
SYNE4_chr19_35998307_36013813	0/0	c0005	1215	9	9	0	0	0	0	copy fasta	SYNE4	chr19	35998307	36013813
SYNE4_chr19_35998307_36013813	0/0	c0006	1215	9	0	0	9	0	0	copy fasta	SYNE4	chr19	35998307	36013813
SYNE4_chr19_35998307_36013813	0/0	c0007	1215	5	4	1	0	0	0	copy fasta	SYNE4	chr19	35998307	36013813
SYNE4_chr19_35998307_36013813	0/0	c0008	1215	3	3	0	0	0	0	copy fasta	SYNE4	chr19	35998307	36013813
SYNE4_chr19_35998307_36013813	0/0	c0009	1215	3	3	0	0	0	0	copy fasta	SYNE4	chr19	35998307	36013813
SYNE4_chr19_35998307_36013813	0/0	c0010	1215	2	0	2	0	0	0	copy fasta	SYNE4	chr19	35998307	36013813
SYNE4_chr19_35998307_36013813	0/0	c0011	1215	2	0	0	0	0	2	copy fasta	SYNE4	chr19	35998307	36013813
SYNE4_chr19_35998307_36013813	0/0	c0012	1238	1	0	0	1	0	0	copy fasta	SYNE4	chr19	35998307	36013813
SYNE4_chr19_35998307_36013813	0/0	c0013	1215	1	1	0	0	0	0	copy fasta	SYNE4	chr19	35998307	36013813
SYNE4_chr19_35998307_36013813	0/0	c0014	1215	1	0	0	1	0	0	copy fasta	SYNE4	chr19	35998307	36013813
SYNE4_chr19_35998307_36013813	0/0	c0015	1215	1	1	0	0	0	0	copy fasta	SYNE4	chr19	35998307	36013813
SYNE4_chr19_35998307_36013813	0/0	c0016	1215	1	0	0	1	0	0	copy fasta	SYNE4	chr19	35998307	36013813
SYNE4_chr19_35998307_36013813	0/0	c0017	1215	1	0	1	0	0	0	copy fasta	SYNE4	chr19	35998307	36013813
SYNGAP1_chr6_33415065_33458689	0/1	c0001	4032	134	35	33	43	10	12	copy fasta	SYNGAP1	chr6	33415065	33458689
SYNGAP1_chr6_33415065_33458689	0/0	c0002	4032	102	23	20	44	2	13	copy fasta	SYNGAP1	chr6	33415065	33458689
SYNGAP1_chr6_33415065_33458689	0/0	c0003	4032	16	12	0	2	0	2	copy fasta	SYNGAP1	chr6	33415065	33458689
SYNGAP1_chr6_33415065_33458689	0/0	c0004	4032	14	14	0	0	0	0	copy fasta	SYNGAP1	chr6	33415065	33458689
SYNGAP1_chr6_33415065_33458689	0/0	c0005	4032	13	0	9	1	1	2	copy fasta	SYNGAP1	chr6	33415065	33458689
SYNGAP1_chr6_33415065_33458689	0/0	c0006	4032	9	0	1	7	1	0	copy fasta	SYNGAP1	chr6	33415065	33458689
SYNGAP1_chr6_33415065_33458689	0/0	c0007	4032	6	4	0	2	0	0	copy fasta	SYNGAP1	chr6	33415065	33458689
SYNGAP1_chr6_33415065_33458689	0/0	c0008	4032	4	0	0	4	0	0	copy fasta	SYNGAP1	chr6	33415065	33458689
SYNGAP1_chr6_33415065_33458689	0/0	c0009	4032	2	0	0	0	2	0	copy fasta	SYNGAP1	chr6	33415065	33458689
SYNGAP1_chr6_33415065_33458689	0/0	c0010	4032	2	0	0	2	0	0	copy fasta	SYNGAP1	chr6	33415065	33458689
SYNGAP1_chr6_33415065_33458689	0/0	c0011	4032	2	0	0	1	0	1	copy fasta	SYNGAP1	chr6	33415065	33458689
SYNGAP1_chr6_33415065_33458689	0/0	c0012	4032	1	0	1	0	0	0	copy fasta	SYNGAP1	chr6	33415065	33458689
SYNGAP1_chr6_33415065_33458689	0/0	c0013	4032	1	1	0	0	0	0	copy fasta	SYNGAP1	chr6	33415065	33458689
SYNGAP1_chr6_33415065_33458689	0/0	c0014	4032	1	1	0	0	0	0	copy fasta	SYNGAP1	chr6	33415065	33458689
SYNGR1_chr22_39344991_39390575	0/1	c0001	705	248	82	50	77	10	28	copy fasta	SYNGR1	chr22	39344991	39390575
SYNGR1_chr22_39344991_39390575	1/0	c0002	702	35	9	15	0	1	9	copy fasta	SYNGR1	chr22	39344991	39390575
SYNGR1_chr22_39344991_39390575	0/0	c0003	705	5	0	0	0	0	5	copy fasta	SYNGR1	chr22	39344991	39390575
SYNGR1_chr22_39344991_39390575	0/0	c0004	705	3	2	0	0	0	1	copy fasta	SYNGR1	chr22	39344991	39390575
SYNGR1_chr22_39344991_39390575	0/0	c0005	702	2	0	0	0	2	0	copy fasta	SYNGR1	chr22	39344991	39390575
SYNGR1_chr22_39344991_39390575	0/0	c0006	705	1	0	0	0	0	1	copy fasta	SYNGR1	chr22	39344991	39390575
SYNGR1_chr22_39344991_39390575	0/0	c0007	705	1	0	1	0	0	0	copy fasta	SYNGR1	chr22	39344991	39390575
SYNGR1_chr22_39344991_39390575	0/0	c0008	705	1	0	0	1	0	0	copy fasta	SYNGR1	chr22	39344991	39390575
SYNGR1_chr22_39344991_39390575	0/0	c0009	705	1	1	0	0	0	0	copy fasta	SYNGR1	chr22	39344991	39390575