JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SYNGR1_chr22_39344991_39390575	0/0	c0010	705	1	1	0	0	0	0	copy fasta	SYNGR1	chr22	39344991	39390575
SYNGR1_chr22_39344991_39390575	0/0	c0011	702	1	1	0	0	0	0	copy fasta	SYNGR1	chr22	39344991	39390575
SYNGR1_chr22_39344991_39390575	0/0	c0012	705	1	0	0	0	1	0	copy fasta	SYNGR1	chr22	39344991	39390575
SYNGR2_chr17_78163581_78177720	1/0	c0001	675	330	79	60	139	14	37	copy fasta	SYNGR2	chr17	78163581	78177720
SYNGR2_chr17_78163581_78177720	0/0	c0002	675	48	1	3	37	2	5	copy fasta	SYNGR2	chr17	78163581	78177720
SYNGR2_chr17_78163581_78177720	0/1	c0003	675	23	2	12	0	0	8	copy fasta	SYNGR2	chr17	78163581	78177720
SYNGR2_chr17_78163581_78177720	0/0	c0004	675	22	0	0	22	0	0	copy fasta	SYNGR2	chr17	78163581	78177720
SYNGR2_chr17_78163581_78177720	0/0	c0005	675	14	12	2	0	0	0	copy fasta	SYNGR2	chr17	78163581	78177720
SYNGR2_chr17_78163581_78177720	0/0	c0006	675	3	0	0	3	0	0	copy fasta	SYNGR2	chr17	78163581	78177720
SYNGR2_chr17_78163581_78177720	0/0	c0007	675	2	0	2	0	0	0	copy fasta	SYNGR2	chr17	78163581	78177720
SYNGR2_chr17_78163581_78177720	0/0	c0008	675	2	2	0	0	0	0	copy fasta	SYNGR2	chr17	78163581	78177720
SYNGR2_chr17_78163581_78177720	0/0	c0009	675	1	0	0	1	0	0	copy fasta	SYNGR2	chr17	78163581	78177720
SYNGR2_chr17_78163581_78177720	0/0	c0010	675	1	0	0	1	0	0	copy fasta	SYNGR2	chr17	78163581	78177720
SYNGR2_chr17_78163581_78177720	0/0	c0011	675	1	1	0	0	0	0	copy fasta	SYNGR2	chr17	78163581	78177720
SYNGR2_chr17_78163581_78177720	0/0	c0012	675	1	0	0	1	0	0	copy fasta	SYNGR2	chr17	78163581	78177720
SYNGR2_chr17_78163581_78177720	0/0	c0013	675	1	1	0	0	0	0	copy fasta	SYNGR2	chr17	78163581	78177720
SYNGR2_chr17_78163581_78177720	0/0	c0014	675	1	0	1	0	0	0	copy fasta	SYNGR2	chr17	78163581	78177720
SYNGR3_chr16_1984970_1999275	1/1	c0001	690	422	92	82	180	18	48	copy fasta	SYNGR3	chr16	1984970	1999275
SYNGR3_chr16_1984970_1999275	0/0	c0002	690	2	0	0	0	0	2	copy fasta	SYNGR3	chr16	1984970	1999275
SYNGR3_chr16_1984970_1999275	0/0	c0003	690	1	0	0	1	0	0	copy fasta	SYNGR3	chr16	1984970	1999275
SYNGR3_chr16_1984970_1999275	0/0	c0004	690	1	1	0	0	0	0	copy fasta	SYNGR3	chr16	1984970	1999275
SYNGR3_chr16_1984970_1999275	0/0	c0005	690	1	1	0	0	0	0	copy fasta	SYNGR3	chr16	1984970	1999275
SYNGR3_chr16_1984970_1999275	0/0	c0006	690	1	0	0	1	0	0	copy fasta	SYNGR3	chr16	1984970	1999275
SYNGR4_chr19_48359367_48381377	1/1	c0001	705	377	90	72	164	10	39	copy fasta	SYNGR4	chr19	48359367	48381377
SYNGR4_chr19_48359367_48381377	0/0	c0002	705	36	3	4	23	2	4	copy fasta	SYNGR4	chr19	48359367	48381377
SYNGR4_chr19_48359367_48381377	0/0	c0003	705	6	4	2	0	0	0	copy fasta	SYNGR4	chr19	48359367	48381377
SYNGR4_chr19_48359367_48381377	0/0	c0004	705	2	0	0	2	0	0	copy fasta	SYNGR4	chr19	48359367	48381377
SYNGR4_chr19_48359367_48381377	0/0	c0005	705	1	0	0	0	0	1	copy fasta	SYNGR4	chr19	48359367	48381377
SYNGR4_chr19_48359367_48381377	0/0	c0006	705	1	0	0	1	0	0	copy fasta	SYNGR4	chr19	48359367	48381377
SYNGR4_chr19_48359367_48381377	0/0	c0007	705	1	1	0	0	0	0	copy fasta	SYNGR4	chr19	48359367	48381377
SYNGR4_chr19_48359367_48381377	0/0	c0008	705	1	1	0	0	0	0	copy fasta	SYNGR4	chr19	48359367	48381377
SYNGR4_chr19_48359367_48381377	0/0	c0009	705	1	1	0	0	0	0	copy fasta	SYNGR4	chr19	48359367	48381377
SYNGR4_chr19_48359367_48381377	0/0	c0010	705	1	0	0	0	0	1	copy fasta	SYNGR4	chr19	48359367	48381377
SYNGR4_chr19_48359367_48381377	0/0	c0011	705	1	0	0	1	0	0	copy fasta	SYNGR4	chr19	48359367	48381377
SYNGR4_chr19_48359367_48381377	0/0	c0012	705	1	0	0	0	0	1	copy fasta	SYNGR4	chr19	48359367	48381377
SYNGR4_chr19_48359367_48381377	0/0	c0013	705	1	0	0	1	0	0	copy fasta	SYNGR4	chr19	48359367	48381377
SYNJ1_chr21_32623763_32733013	1/1	c0001	3936	194	50	34	87	4	17	copy fasta	SYNJ1	chr21	32623763	32733013
SYNJ1_chr21_32623763_32733013	0/0	c0002	3936	132	24	18	70	3	17	copy fasta	SYNJ1	chr21	32623763	32733013
SYNJ1_chr21_32623763_32733013	0/0	c0003	3936	6	6	0	0	0	0	copy fasta	SYNJ1	chr21	32623763	32733013
SYNJ1_chr21_32623763_32733013	0/0	c0004	3936	6	0	3	0	2	1	copy fasta	SYNJ1	chr21	32623763	32733013
SYNJ1_chr21_32623763_32733013	0/0	c0005	3936	2	1	0	0	1	0	copy fasta	SYNJ1	chr21	32623763	32733013
SYNJ1_chr21_32623763_32733013	0/0	c0006	3936	1	0	0	0	0	1	copy fasta	SYNJ1	chr21	32623763	32733013
SYNJ1_chr21_32623763_32733013	0/0	c0007	3936	1	0	0	0	0	1	copy fasta	SYNJ1	chr21	32623763	32733013
SYNJ1_chr21_32623763_32733013	0/0	c0008	3936	1	0	0	0	0	1	copy fasta	SYNJ1	chr21	32623763	32733013
SYNJ1_chr21_32623763_32733013	0/0	c0009	3936	1	0	0	1	0	0	copy fasta	SYNJ1	chr21	32623763	32733013
SYNJ1_chr21_32623763_32733013	0/0	c0010	3936	1	0	1	0	0	0	copy fasta	SYNJ1	chr21	32623763	32733013
SYNJ1_chr21_32623763_32733013	0/0	c0011	3936	1	1	0	0	0	0	copy fasta	SYNJ1	chr21	32623763	32733013
SYNJ2BP_chr14_70361499_70422090	1/1	c0001	438	351	75	56	170	8	40	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	c0002	438	11	7	4	0	0	0	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	c0003	438	1	0	1	0	0	0	copy fasta	SYNJ2BP	chr14	70361499	70422090