JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SYNJ2BP_chr14_70361499_70422090	0/0	c0004	438	1	0	1	0	0	0	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2_chr6_157976863_158104176	0/1	c0001	4491	134	29	23	62	7	12	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	1/0	c0002	4491	61	4	13	39	0	4	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	c0003	4491	27	7	10	0	3	7	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	c0004	4491	11	4	1	0	1	5	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	c0005	4491	9	1	0	5	1	2	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	c0006	4491	6	4	0	0	1	1	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	c0007	4491	5	0	0	4	0	1	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	c0008	4491	4	4	0	0	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	c0009	4491	4	3	1	0	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	c0010	4491	3	3	0	0	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	c0011	4491	3	0	0	3	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	c0012	4491	3	3	0	0	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	c0013	4491	3	3	0	0	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	c0014	4491	2	2	0	0	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	c0015	4491	2	0	2	0	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	c0016	4491	2	1	0	0	1	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	c0017	4491	1	1	0	0	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	c0018	4491	1	0	0	1	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	c0019	4491	1	0	0	0	0	1	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	c0020	4491	1	1	0	0	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	c0021	4491	1	0	0	1	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	c0022	4491	1	0	0	0	0	1	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	c0023	4491	1	0	0	1	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	c0024	4491	1	1	0	0	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	c0025	4491	1	1	0	0	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	c0026	4491	1	0	1	0	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	c0027	4491	1	1	0	0	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	c0028	4491	1	0	1	0	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	c0029	4491	1	0	0	0	0	1	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	c0030	4491	1	0	0	1	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	c0031	4491	1	1	0	0	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	c0032	4491	1	1	0	0	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	c0033	4491	1	0	0	0	0	1	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	c0034	4491	1	0	0	1	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	c0035	4491	1	0	0	1	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	c0036	4491	1	1	0	0	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	c0037	4491	1	0	1	0	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	c0038	4491	1	1	0	0	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	c0039	4491	1	1	0	0	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	c0040	4491	1	1	0	0	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	c0041	4491	1	0	0	1	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	c0042	4491	1	0	0	1	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	c0043	4491	1	1	0	0	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	c0044	4491	1	1	0	0	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	c0045	4491	1	1	0	0	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	c0046	4491	1	1	0	0	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	c0047	4491	1	0	0	1	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	c0048	4491	1	1	0	0	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	c0049	4491	1	0	1	0	0	0	copy fasta	SYNJ2	chr6	157976863	158104176