JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SYNM_chr15_99100080_99140593	0/0	c0001	4698	97	15	20	42	6	14	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	1/0	c0002	4698	68	2	13	43	3	6	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0003	4698	63	5	4	47	2	5	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0004	4698	23	2	5	12	0	4	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0005	4698	17	16	1	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0006	4698	15	3	2	7	1	2	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0007	4698	14	8	0	3	0	3	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0008	4698	7	0	4	0	0	3	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0009	4698	6	6	0	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0010	4698	6	0	1	3	1	1	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0011	4698	6	0	6	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0012	4698	6	3	1	0	0	2	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0013	4698	5	0	0	5	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0014	4698	5	0	0	5	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0015	4698	5	0	0	5	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0016	4698	4	2	2	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0017	4698	3	3	0	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0018	4698	3	3	0	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0019	4698	3	3	0	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0020	4698	2	2	0	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0021	4698	2	2	0	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0022	4698	2	2	0	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0023	4698	2	2	0	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0024	4698	2	0	0	2	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0025	4698	2	0	0	2	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0026	4698	2	0	0	2	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0027	4698	2	2	0	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0028	4698	2	2	0	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/1	c0029	4698	2	0	1	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0030	4698	2	0	0	2	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0031	4698	1	1	0	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0032	4698	1	0	0	1	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0033	4698	1	1	0	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0034	4698	1	0	0	0	0	1	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0035	4698	1	1	0	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0036	4698	1	1	0	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0037	4698	1	1	0	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0038	4698	1	0	0	0	0	1	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0039	4698	1	1	0	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0040	4698	1	1	0	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0041	4698	1	1	0	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0042	4698	1	1	0	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0043	4698	1	1	0	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0044	4698	1	0	0	1	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0045	4698	1	0	0	1	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0046	4698	1	0	1	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0047	4698	1	0	0	1	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0048	4698	1	1	0	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0049	4698	1	0	0	1	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0050	4698	1	0	1	0	0	0	copy fasta	SYNM	chr15	99100080	99140593