JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SYNM_chr15_99100080_99140593	0/0	c0051	4698	1	0	1	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0052	4698	1	0	1	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0053	4698	1	0	1	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0054	4698	1	0	0	0	0	1	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0055	4698	1	0	1	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0056	4698	1	1	0	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0057	4698	1	0	0	1	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0058	4698	1	1	0	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0059	4698	1	0	0	1	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0060	4698	1	0	0	1	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0061	4698	1	0	0	0	0	1	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0062	4698	1	1	0	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0063	4698	1	0	0	1	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0064	4698	1	0	0	0	0	1	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0065	4698	1	0	0	1	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0066	4698	1	1	0	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0067	4698	1	1	0	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0068	4698	1	0	1	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0069	4698	1	0	0	0	1	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0070	4698	1	1	0	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0071	4719	1	0	1	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	c0072	4698	1	0	0	0	0	1	copy fasta	SYNM	chr15	99100080	99140593
SYNPO2L_chr10_73639886_73661029	1/1	c0001	2934	243	49	41	110	9	32	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	c0002	2934	57	12	4	33	0	8	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	c0003	2934	34	25	6	3	0	0	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	c0004	2934	11	0	0	11	0	0	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	c0005	2934	8	0	0	8	0	0	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	c0006	2934	6	4	2	0	0	0	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	c0007	2934	4	0	0	4	0	0	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	c0008	2934	2	2	0	0	0	0	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	c0009	2934	2	1	1	0	0	0	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	c0010	2934	2	2	0	0	0	0	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	c0011	2934	1	0	0	1	0	0	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	c0012	2934	1	0	0	1	0	0	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	c0013	2934	1	1	0	0	0	0	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	c0014	2934	1	0	0	1	0	0	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	c0015	2934	1	0	1	0	0	0	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	c0016	2934	1	0	0	0	0	1	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	c0017	2934	1	0	0	1	0	0	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	c0018	2934	1	0	0	0	1	0	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	c0019	2934	1	1	0	0	0	0	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	c0020	2934	1	1	0	0	0	0	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	c0021	2934	1	0	0	0	0	1	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	c0022	2934	1	0	0	1	0	0	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	c0023	2934	1	0	1	0	0	0	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2_chr4_118883854_119066247	0/0	c0001	3783	53	11	14	20	2	6	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/1	c0002	3786	43	5	11	23	1	2	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	c0003	3786	37	16	1	19	0	1	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	c0004	3786	34	4	13	8	0	9	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	c0005	3783	25	1	5	18	0	1	copy fasta	SYNPO2	chr4	118883854	119066247