JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SYNPO2_chr4_118883854_119066247	0/0	c0006	3786	20	4	4	9	1	2	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	1/0	c0007	3786	17	4	0	10	0	2	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	c0008	3786	14	1	2	5	0	6	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	c0009	3783	9	8	1	0	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	c0010	3783	5	5	0	0	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	c0011	3783	5	0	2	0	1	2	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	c0012	3786	4	4	0	0	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	c0013	3786	4	4	0	0	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	c0014	3783	4	0	1	3	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	c0015	3783	4	0	0	4	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	c0016	3783	3	2	1	0	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	c0017	3783	3	0	0	3	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	c0018	3786	2	2	0	0	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	c0019	3786	2	2	0	0	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	c0020	3786	2	2	0	0	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	c0021	3786	2	0	0	2	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	c0022	3786	1	0	0	1	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	c0023	3786	1	1	0	0	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	c0024	3786	1	1	0	0	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	c0025	3786	1	1	0	0	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	c0026	3786	1	1	0	0	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	c0027	3786	1	0	1	0	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	c0028	3786	1	0	0	1	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	c0029	3786	1	1	0	0	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	c0030	3786	1	1	0	0	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	c0031	3786	1	0	0	0	1	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	c0032	3783	1	0	1	0	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	c0033	3783	1	0	1	0	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	c0034	3786	1	0	0	1	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	c0035	3786	1	0	0	0	0	1	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	c0036	3783	1	0	0	1	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	c0037	3783	1	1	0	0	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	c0038	3783	1	1	0	0	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	c0039	3783	1	1	0	0	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO_chr5_150635660_150664207	1/1	c0001	2712	276	41	46	137	12	38	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	c0002	2712	17	17	0	0	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	c0003	2712	15	14	1	0	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	c0004	2700	12	3	1	8	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	c0005	2700	10	0	0	10	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	c0006	2712	8	0	0	8	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	c0007	2706	6	4	2	0	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	c0008	2718	5	4	1	0	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	c0009	2724	4	4	0	0	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	c0010	2712	4	0	0	4	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	c0011	2718	3	1	0	2	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	c0012	2712	3	0	2	1	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	c0013	2718	3	3	0	0	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	c0014	2724	2	2	0	0	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	c0015	2712	2	0	2	0	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	c0016	2724	2	0	1	0	0	1	copy fasta	SYNPO	chr5	150635660	150664207