JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SYNPO_chr5_150635660_150664207	0/0	c0017	2712	2	0	0	2	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	c0018	2712	2	0	1	0	0	1	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	c0019	2712	1	1	0	0	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	c0020	2712	1	0	1	0	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	c0021	2712	1	0	0	1	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	c0022	2700	1	1	0	0	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	c0023	2712	1	1	0	0	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	c0024	2724	1	1	0	0	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	c0025	2712	1	1	0	0	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	c0026	2712	1	0	0	1	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	c0027	2694	1	0	0	1	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	c0028	2724	1	1	0	0	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	c0029	2712	1	1	0	0	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	c0030	2730	1	0	1	0	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	c0031	2712	1	0	0	1	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	c0032	2706	1	0	1	0	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPR_chr3_63273308_63621924	0/0	c0001	858	238	87	39	78	8	26	copy fasta	SYNPR	chr3	63273308	63621924
SYNPR_chr3_63273308_63621924	0/0	c0002	858	3	0	0	3	0	0	copy fasta	SYNPR	chr3	63273308	63621924
SYNPR_chr3_63273308_63621924	0/0	c0003	858	2	0	0	0	0	2	copy fasta	SYNPR	chr3	63273308	63621924
SYNPR_chr3_63273308_63621924	0/0	c0004	858	1	1	0	0	0	0	copy fasta	SYNPR	chr3	63273308	63621924
SYNPR_chr3_63273308_63621924	0/0	c0005	858	1	0	1	0	0	0	copy fasta	SYNPR	chr3	63273308	63621924
SYNPR_chr3_63273308_63621924	0/0	c0006	858	1	0	0	1	0	0	copy fasta	SYNPR	chr3	63273308	63621924
SYNRG_chr17_37509807_37614418	0/0	c0001	3945	121	36	12	59	2	12	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	c0002	3945	78	9	20	36	4	9	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	c0003	3945	63	5	20	27	4	7	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/1	c0004	3945	46	7	9	19	4	6	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	c0005	3945	15	15	0	0	0	0	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	c0006	3945	6	6	0	0	0	0	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	c0007	3945	2	2	0	0	0	0	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	c0008	3945	2	1	1	0	0	0	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	c0009	3945	2	0	0	0	0	2	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	c0010	3945	2	0	2	0	0	0	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	c0011	3945	2	2	0	0	0	0	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	c0012	3945	1	0	1	0	0	0	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	c0013	3945	1	0	1	0	0	0	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	c0014	3945	1	1	0	0	0	0	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	c0015	3945	1	0	0	1	0	0	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	c0016	3945	1	0	0	1	0	0	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	c0017	3945	1	0	1	0	0	0	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	c0018	3945	1	0	0	1	0	0	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	c0019	3945	1	0	0	1	0	0	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	c0020	3945	1	0	0	1	0	0	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	c0021	3945	1	0	1	0	0	0	copy fasta	SYNRG	chr17	37509807	37614418
SYPL1_chr7_106085505_106117312	1/1	c0001	726	391	87	62	186	14	40	copy fasta	SYPL1	chr7	106085505	106117312
SYPL1_chr7_106085505_106117312	0/0	c0002	726	4	4	0	0	0	0	copy fasta	SYPL1	chr7	106085505	106117312
SYPL1_chr7_106085505_106117312	0/0	c0003	726	2	2	0	0	0	0	copy fasta	SYPL1	chr7	106085505	106117312
SYPL1_chr7_106085505_106117312	0/0	c0004	726	1	1	0	0	0	0	copy fasta	SYPL1	chr7	106085505	106117312
SYPL2_chr1_109461546_109487134	1/1	c0001	819	268	78	56	78	18	36	copy fasta	SYPL2	chr1	109461546	109487134
SYPL2_chr1_109461546_109487134	0/0	c0002	819	13	13	0	0	0	0	copy fasta	SYPL2	chr1	109461546	109487134
SYPL2_chr1_109461546_109487134	0/0	c0003	819	6	2	0	0	0	4	copy fasta	SYPL2	chr1	109461546	109487134