JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SYPL2_chr1_109461546_109487134	0/0	c0004	819	2	2	0	0	0	0	copy fasta	SYPL2	chr1	109461546	109487134
SYPL2_chr1_109461546_109487134	0/0	c0005	819	1	1	0	0	0	0	copy fasta	SYPL2	chr1	109461546	109487134
SYPL2_chr1_109461546_109487134	0/0	c0006	819	1	0	0	0	0	1	copy fasta	SYPL2	chr1	109461546	109487134
SYPL2_chr1_109461546_109487134	0/0	c0007	819	1	0	0	0	0	1	copy fasta	SYPL2	chr1	109461546	109487134
SYPL2_chr1_109461546_109487134	0/0	c0008	819	1	1	0	0	0	0	copy fasta	SYPL2	chr1	109461546	109487134
SYPL2_chr1_109461546_109487134	0/0	c0009	819	1	1	0	0	0	0	copy fasta	SYPL2	chr1	109461546	109487134
SYP_chrX_49182815_49205193	1/1	c0001	942	295	71	50	128	11	33	copy fasta	SYP	chrX	49182815	49205193
SYP_chrX_49182815_49205193	0/0	c0002	942	1	0	0	0	0	1	copy fasta	SYP	chrX	49182815	49205193
SYP_chrX_49182815_49205193	0/0	c0003	942	1	1	0	0	0	0	copy fasta	SYP	chrX	49182815	49205193
SYP_chrX_49182815_49205193	0/0	c0004	942	1	0	0	1	0	0	copy fasta	SYP	chrX	49182815	49205193
SYS1_chr20_45358156_45374209	1/1	c0001	471	385	95	66	174	10	38	copy fasta	SYS1	chr20	45358156	45374209
SYS1_chr20_45358156_45374209	0/0	c0002	471	1	1	0	0	0	0	copy fasta	SYS1	chr20	45358156	45374209
SYT10_chr12_33369238_33444819	1/1	c0001	1572	238	61	42	112	3	18	copy fasta	SYT10	chr12	33369238	33444819
SYT10_chr12_33369238_33444819	0/0	c0002	1572	38	7	19	10	1	1	copy fasta	SYT10	chr12	33369238	33444819
SYT10_chr12_33369238_33444819	0/0	c0003	1572	13	0	6	1	2	4	copy fasta	SYT10	chr12	33369238	33444819
SYT10_chr12_33369238_33444819	0/0	c0004	1572	10	8	0	2	0	0	copy fasta	SYT10	chr12	33369238	33444819
SYT10_chr12_33369238_33444819	0/0	c0005	1572	8	7	0	0	0	1	copy fasta	SYT10	chr12	33369238	33444819
SYT10_chr12_33369238_33444819	0/0	c0006	1572	4	1	0	0	0	3	copy fasta	SYT10	chr12	33369238	33444819
SYT10_chr12_33369238_33444819	0/0	c0007	1572	2	2	0	0	0	0	copy fasta	SYT10	chr12	33369238	33444819
SYT10_chr12_33369238_33444819	0/0	c0008	1572	2	1	1	0	0	0	copy fasta	SYT10	chr12	33369238	33444819
SYT10_chr12_33369238_33444819	0/0	c0009	1572	2	0	0	2	0	0	copy fasta	SYT10	chr12	33369238	33444819
SYT10_chr12_33369238_33444819	0/0	c0010	1572	1	0	0	1	0	0	copy fasta	SYT10	chr12	33369238	33444819
SYT10_chr12_33369238_33444819	0/0	c0011	1572	1	0	0	0	0	1	copy fasta	SYT10	chr12	33369238	33444819
SYT10_chr12_33369238_33444819	0/0	c0012	1572	1	1	0	0	0	0	copy fasta	SYT10	chr12	33369238	33444819
SYT11_chr1_155854567_155890199	0/1	c0001	1296	282	65	56	113	13	34	copy fasta	SYT11	chr1	155854567	155890199
SYT11_chr1_155854567_155890199	1/0	c0002	1296	17	16	0	0	0	0	copy fasta	SYT11	chr1	155854567	155890199
SYT11_chr1_155854567_155890199	0/0	c0003	1296	12	12	0	0	0	0	copy fasta	SYT11	chr1	155854567	155890199
SYT11_chr1_155854567_155890199	0/0	c0004	1296	2	1	0	0	1	0	copy fasta	SYT11	chr1	155854567	155890199
SYT11_chr1_155854567_155890199	0/0	c0005	1296	1	0	0	1	0	0	copy fasta	SYT11	chr1	155854567	155890199
SYT12_chr11_67018134_67055863	1/1	c0001	1266	253	68	40	101	12	30	copy fasta	SYT12	chr11	67018134	67055863
SYT12_chr11_67018134_67055863	0/0	c0002	1266	30	12	2	16	0	0	copy fasta	SYT12	chr11	67018134	67055863
SYT12_chr11_67018134_67055863	0/0	c0003	1266	2	2	0	0	0	0	copy fasta	SYT12	chr11	67018134	67055863
SYT12_chr11_67018134_67055863	0/0	c0004	1266	1	0	0	0	0	1	copy fasta	SYT12	chr11	67018134	67055863
SYT12_chr11_67018134_67055863	0/0	c0005	1266	1	0	0	1	0	0	copy fasta	SYT12	chr11	67018134	67055863
SYT12_chr11_67018134_67055863	0/0	c0006	1266	1	0	0	0	0	1	copy fasta	SYT12	chr11	67018134	67055863
SYT12_chr11_67018134_67055863	0/0	c0007	1266	1	0	0	1	0	0	copy fasta	SYT12	chr11	67018134	67055863
SYT12_chr11_67018134_67055863	0/0	c0008	1266	1	0	0	1	0	0	copy fasta	SYT12	chr11	67018134	67055863
SYT12_chr11_67018134_67055863	0/0	c0009	1266	1	1	0	0	0	0	copy fasta	SYT12	chr11	67018134	67055863
SYT12_chr11_67018134_67055863	0/0	c0010	1266	1	1	0	0	0	0	copy fasta	SYT12	chr11	67018134	67055863
SYT12_chr11_67018134_67055863	0/0	c0011	1266	1	0	0	1	0	0	copy fasta	SYT12	chr11	67018134	67055863
SYT12_chr11_67018134_67055863	0/0	c0012	1266	1	1	0	0	0	0	copy fasta	SYT12	chr11	67018134	67055863
SYT12_chr11_67018134_67055863	0/0	c0013	1266	1	0	0	1	0	0	copy fasta	SYT12	chr11	67018134	67055863
SYT12_chr11_67018134_67055863	0/0	c0014	1266	1	1	0	0	0	0	copy fasta	SYT12	chr11	67018134	67055863
SYT13_chr11_45235302_45291341	1/1	c0001	1281	355	82	61	169	6	35	copy fasta	SYT13	chr11	45235302	45291341
SYT13_chr11_45235302_45291341	0/0	c0002	1281	1	0	0	1	0	0	copy fasta	SYT13	chr11	45235302	45291341
SYT13_chr11_45235302_45291341	0/0	c0003	1281	1	1	0	0	0	0	copy fasta	SYT13	chr11	45235302	45291341
SYT13_chr11_45235302_45291341	0/0	c0004	1281	1	1	0	0	0	0	copy fasta	SYT13	chr11	45235302	45291341
SYT13_chr11_45235302_45291341	0/0	c0005	1281	1	0	0	0	0	1	copy fasta	SYT13	chr11	45235302	45291341
SYT13_chr11_45235302_45291341	0/0	c0006	1281	1	0	0	0	0	1	copy fasta	SYT13	chr11	45235302	45291341
SYT13_chr11_45235302_45291341	0/0	c0007	1281	1	1	0	0	0	0	copy fasta	SYT13	chr11	45235302	45291341